PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027165308.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 409aa MW: 44102.2 Da PI: 8.7886

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027165308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.7	6.4e-11	335	380	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq XP_027165308.1 335 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 380 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MYPSSTSSSS QGSMGPNGGS STGGLIRYGS APSSLLATAA DSVTNPSSRE FSALGSSHNL 60 HMGPTSSSSS RFFPSSETSS LTSESTCKTS NSNPREKGPN ISSGLHRAFG FKQDNHQGSI 120 IGGAGGAGMV SSSSSSTATT ASPLVRHSSS PPGFLNHLTH ACASNEDNDF LTGAQSYELV 180 RLINTQFVIY HTLKFIVIIK CFPIARTHDI SRLNSQLSFT HQETLSQISE ETENVDNGLN 240 SENEKRKSAH TYSNVSYGVG PWEDANTIMF SMGPTSKRAK SMSGDIVNLN SMETQFGMPQ 300 TMLDMSSMDK LLNIPQDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK KLQDLVPNMD 360 KQTSYADMLD LAVQHIKGLQ NQVQRLHKEL DNCTCGCRKP QDSCRGGKS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MYPSSTSSSS QGSMGPNGGS STGGLIRYGS APSSLLATAA DSVTNPSSRE FSALGSSHNL  60
HMGPTSSSSS RFFPSSETSS LTSESTCKTS NSNPREKGPN ISSGLHRAFG FKQDNHQGSI  120
IGGAGGAGMV SSSSSSTATT ASPLVRHSSS PPGFLNHLTH ACASNEDNDF LTGAQSYELV  180
RLINTQFVIY HTLKFIVIIK CFPIARTHDI SRLNSQLSFT HQETLSQISE ETENVDNGLN  240
SENEKRKSAH TYSNVSYGVG PWEDANTIMF SMGPTSKRAK SMSGDIVNLN SMETQFGMPQ  300
TMLDMSSMDK LLNIPQDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK KLQDLVPNMD  360
KQTSYADMLD LAVQHIKGLQ NQVQRLHKEL DNCTCGCRKP QDSCRGGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	7e-64	bHLH family protein