PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027165816.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 214aa MW: 24508 Da PI: 9.9846

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027165816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	4.8e-10	90	138	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h ++Er RR + +++f eL ++lP +K +K +i+++A e I++Lq XP_027165816.1 90 NRKHVINERMRRGKQKKSFVELHKMLPYG-----TKGDKNSIVQMAAERIHELQ 138 578**********************97.....799999***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MEEYFFQHYS QGDEVLWFDG EVLPLPAVDD QYHGSSFVKY SNHPLQGFGS NGTVNHGKND 60 RNANKRMIEL LKKRWKPPTI GAVEAERERN RKHVINERMR RGKQKKSFVE LHKMLPYGTK 120 GDKNSIVQMA AERIHELQRC NEELKRRKIE LELALAAAIH DDEENLEVAK IKLRVVHPSS 180 GIDSMLEVLK CLKNTGTKTK GSCRSGKGSS RNLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	101	RNRKHVINERMRR
2	99	106	MRRGKQKK
3	145	172	KRRKIELELALAAAIHDDEENLEVAKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	3e-23	bHLH family protein