PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027165847.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 474aa    MW: 52884.3 Da    PI: 6.8234
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027165847.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2739.6e-841054734374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse.lykalppsetsekn.sseelaalklfsev...sPilkf 93 
                     lL ++A  +s++++  a++lL+  +  as +g+p+qR++ yf+eAL+++++ ++++ + +  p  ++++ + ++  l+ + ++ e+    P+ ++
  XP_027165847.1 105 LLQAAAFNFSNQQFVHARNLLSICQGSASLSGNPIQRVVYYFVEALQEKITMETEGeVLQEKPEGNQRDLTiEEAFLSLHPALMEChakLPFCRI 199
                     344555567888888************************************954440333333333333333333334444466553337***** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +++ta qaIl+ v +++r+H iD++i+ G+QW  L+qaLa+R e p   l+iT+vg+    ske++ee+g++L++fA++l++pf f++ v+++l+
  XP_027165847.1 200 TQFTAIQAILDNVGSAKRIHLIDLGIKCGTQWSVLMQALANRHECPLeLLKITAVGP----SKEMIEEIGKQLSSFAASLNIPFAFRI-VVSDLQ 289
                     *******************************************6665499*******....**************************9.7999** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +++   +++  +E++a+ + l+l +ll+ +++les    +L+++k+l+P+v+v++e ea++n++ F++rf  +l++ +alfd+le+ + r+s  r
  XP_027165847.1 290 NVDQYLFQLAANEVVAIYSELRLASLLAWPHHLES----LLSTIKKLRPRVMVMIEIEANTNAPLFMDRFNASLSVSAALFDCLESCMDRDSPSR 380
                     ***************************99999999....******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + +E ++l++ i+ +++ +g+e+++r+e+ + Wr+ l+++G+ +++ls+ a +qa+l+ +  + +   ++e + + +++gWk+ p+ ++S+W+
  XP_027165847.1 381 AIIEGMFLREGIQYLITSRGKESIHRQESIGFWRAFLKRFGMVEITLSNWAFCQANLVAKSNPcWSSCTLEVNGKGMTIGWKGTPIHMLSVWK 473
                     ***************************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    
MEPQHEEITK GAQTTVPISF LAEAKNKNQL LPAASLHLIK KHHESKVMPE QSPTSEPSSI  60
SCPLSLELST VDIIKMARKI GSGDLSYVKS AVSPENYKDF ELALLLQAAA FNFSNQQFVH  120
ARNLLSICQG SASLSGNPIQ RVVYYFVEAL QEKITMETEG EVLQEKPEGN QRDLTIEEAF  180
LSLHPALMEC HAKLPFCRIT QFTAIQAILD NVGSAKRIHL IDLGIKCGTQ WSVLMQALAN  240
RHECPLELLK ITAVGPSKEM IEEIGKQLSS FAASLNIPFA FRIVVSDLQN VDQYLFQLAA  300
NEVVAIYSEL RLASLLAWPH HLESLLSTIK KLRPRVMVMI EIEANTNAPL FMDRFNASLS  360
VSAALFDCLE SCMDRDSPSR AIIEGMFLRE GIQYLITSRG KESIHRQESI GFWRAFLKRF  420
GMVEITLSNW AFCQANLVAK SNPCWSSCTL EVNGKGMTIG WKGTPIHMLS VWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-47GRAS family protein