PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027165861.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 307aa    MW: 34360.5 Da    PI: 4.46
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027165861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS239.61.4e-731530479373
            GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeel 172
                     + + +f+++ P+  +s+++  qaI e ve + +vHiiD+++  G+Q+  L+qaLa+ +e p  +l+iT+v+    + +e++e+tg+rL +fAe++
  XP_027165861.1  15 STVLAFQKAVPFSYVSQFAGIQAIIEQVEDAGKVHIIDLQVRLGTQYTMLIQALAAGSECPVeHLKITAVAT---SCREAIEATGRRLVSFAESF 106
                     33445**************************************************99965545********9...69****************** PP

            GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                      +p++f++++ +++ dl+ + ++++ +Ea+aV + +  + +  ++  les    ++ ++++l+P+v+v++e ea+hn++ F++rf+eal yy a+
  XP_027165861.1 107 SLPLSFSIVMLDDILDLHGNVFELDDEEAVAVYSEYFFMMMIGSPDRLES----LMGVIRNLNPRVFVITEVEANHNAPVFVNRFTEALFYYGAF 197
                     ************************************99999988888888....***************************************** PP

            GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                     fd++e  l  ++ +r+++E  ++++ i+n+v++eg+er+ rh + + Wre + ++G+ +v+ls +   qa+lll++++ ++  +++ + ++l+ g
  XP_027165861.1 198 FDAFEDCLKDDEANRMVLESIYFSKGIKNIVSAEGEERTIRHVKINVWREFFARFGMVEVELSMSSLYQANLLLKNFAcGNSCTLDVDGKALIVG 292
                     ******************************************************************************9999************* PP

            GRAS 362 WkdrpLvsvSaW 373
                     Wk+ p  s+SaW
  XP_027165861.1 293 WKGTPTNSLSAW 304
                     ************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MLTKYVENAL ATINSTVLAF QKAVPFSYVS QFAGIQAIIE QVEDAGKVHI IDLQVRLGTQ  60
YTMLIQALAA GSECPVEHLK ITAVATSCRE AIEATGRRLV SFAESFSLPL SFSIVMLDDI  120
LDLHGNVFEL DDEEAVAVYS EYFFMMMIGS PDRLESLMGV IRNLNPRVFV ITEVEANHNA  180
PVFVNRFTEA LFYYGAFFDA FEDCLKDDEA NRMVLESIYF SKGIKNIVSA EGEERTIRHV  240
KINVWREFFA RFGMVEVELS MSSLYQANLL LKNFACGNSC TLDVDGKALI VGWKGTPTNS  300
LSAWIFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.14e-48GRAS family protein