PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027165918.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 264aa MW: 30977.8 Da PI: 9.8171

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027165918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62	1.3e-19	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W+++ar g++R +k+c++rw +yl XP_027165918.1 22 KGPWTAEEDRLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69 79********************************************97 PP
2	Myb_DNA-binding	51.1	3.1e-16	75	119	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E++ ++++++++G++ W+tIar ++ gRt++++k++w+++ XP_027165918.1 75 RGQITPHEEKVILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119 7888****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MSWEVMAAEQ LVWGVMEEGW RKGPWTAEED RLLIEYVKLH GEGRWNSVAR LAGLKRNGKS 60 CRLRWVNYLR PDLKRGQITP HEEKVILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF 120 KKKAKVSSDN SEKSKARLLR RQQFQQQQLL QQQQQQQQQT QVFDMRRLMS LLDENENRVP 180 TLPQMKQDAS AAATTIFPNT IDDHHQVFLY SVFNNSAALP EATNHDQDIN WDGLWNMDEF 240 SGNIYYSNSA NRATLRTSAA TPYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	1e-80	MYB family protein