PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027166527.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 124aa MW: 13641.2 Da PI: 6.6223

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027166527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	59.5	9.2e-19	7	60	47	100
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e XP_027166527.1 7 HELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAE 60 6789*********************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence
MVAFSRHELP EHQRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDVL QTQLALAQAE 60 VVQMRMRQFS SISPGTATNS PDHNNITSPS SSRHTQSHHD RTSLFAMGMV IDHQASMGES 120 LWSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-33	LBD family protein