PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027166954.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 961aa MW: 105397 Da PI: 4.8666

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027166954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3e-28	557	608	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF +++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ XP_027166954.1 557 AEKHVSLSVLQQYFCGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 608 5899**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence
MEYPYPSTEK GGFWASPRAQ KDGNASFDGG TRTWNLEDSF QELMNFDAYA GWCNSPSSAD 60 QFFGPFGLSP MSSSYVPLDG MNFGEQSTEG FRVADGETGG SSSSGVEDKM IRQDLENRFH 120 VPMDTASEGV DLTGRNDKSC KQHDDDVVNT VNSLISRPPS QTLPEKMLKA LSLFKESAGG 180 GILAQVWIPI RDGNRYILST CEQPYLLDQA LSGYREVSRA FTFSAEVKPG SFLGLPGRVF 240 ASRVPEWTSN VMYYKEAEYL RVQHALDHEV CGSIAFPVFE DDSFDLSCCA VLELVTIKEQ 300 PHFDLEMDSV CRALQAVNLR SAAPPRLYPQ CLSKNQRVAL AEITDVLRAV CHAHRLPLAL 360 TWIPCSYTEA VDEPVKLRVG GSAASSNENS ILCIEDTACY VNDRSMEGFV HVCMEHYLEE 420 GQAIRLRSTY TGDDDYILEF FLPVNMRGSS EQQLLLNNLS STMQRICRSL RTVSDAELIG 480 GDDIKVELPN RSVNNLPTTA LPRNCSQQSL LNSNSSSSDH LFSGTSETKS SHKGDTASGE 540 QAMAGPKRQS EKKRSTAEKH VSLSVLQQYF CGSLKDAAKS IGVCPTTLKR ICRQHGILRW 600 PSRKINKVNR SLKKIQSVLD SVQGVEGGLK FDPATGGLLA GGSVIQDFDT RKGMLCPVKS 660 ASLRNPDSLT QDTTSACQTY CMDGENSVVK MEECDMDAIE VQNANMLSPN SRKEASKLQS 720 STVVCCNDAK LAALDAGQSQ PASPWPYSGN ASLDSYLKKS SDKEWCLNGD RQKLDKSDHQ 780 LVSLSSSSLV VVDEIEAKMK SDNGLDGDDG GLEYNQPTSS SMTESSNGSG SMMNGSSSSS 840 RNFGEQKHSK NESNFGDSSS KLTAKATYKD DTIRFKFDPS AGCLQLYEEI SKRFKLQLGV 900 FQLKYLDDEE EWVMLVSDAD LQECLEILDF LGTRTVKFLV RDTPQTIGSS GSSNCYLTGG 960 S

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence

MEYPYPSTEK GGFWASPRAQ KDGNASFDGG TRTWNLEDSF QELMNFDAYA GWCNSPSSAD  60
QFFGPFGLSP MSSSYVPLDG MNFGEQSTEG FRVADGETGG SSSSGVEDKM IRQDLENRFH  120
VPMDTASEGV DLTGRNDKSC KQHDDDVVNT VNSLISRPPS QTLPEKMLKA LSLFKESAGG  180
GILAQVWIPI RDGNRYILST CEQPYLLDQA LSGYREVSRA FTFSAEVKPG SFLGLPGRVF  240
ASRVPEWTSN VMYYKEAEYL RVQHALDHEV CGSIAFPVFE DDSFDLSCCA VLELVTIKEQ  300
PHFDLEMDSV CRALQAVNLR SAAPPRLYPQ CLSKNQRVAL AEITDVLRAV CHAHRLPLAL  360
TWIPCSYTEA VDEPVKLRVG GSAASSNENS ILCIEDTACY VNDRSMEGFV HVCMEHYLEE  420
GQAIRLRSTY TGDDDYILEF FLPVNMRGSS EQQLLLNNLS STMQRICRSL RTVSDAELIG  480
GDDIKVELPN RSVNNLPTTA LPRNCSQQSL LNSNSSSSDH LFSGTSETKS SHKGDTASGE  540
QAMAGPKRQS EKKRSTAEKH VSLSVLQQYF CGSLKDAAKS IGVCPTTLKR ICRQHGILRW  600
PSRKINKVNR SLKKIQSVLD SVQGVEGGLK FDPATGGLLA GGSVIQDFDT RKGMLCPVKS  660
ASLRNPDSLT QDTTSACQTY CMDGENSVVK MEECDMDAIE VQNANMLSPN SRKEASKLQS  720
STVVCCNDAK LAALDAGQSQ PASPWPYSGN ASLDSYLKKS SDKEWCLNGD RQKLDKSDHQ  780
LVSLSSSSLV VVDEIEAKMK SDNGLDGDDG GLEYNQPTSS SMTESSNGSG SMMNGSSSSS  840
RNFGEQKHSK NESNFGDSSS KLTAKATYKD DTIRFKFDPS AGCLQLYEEI SKRFKLQLGV  900
FQLKYLDDEE EWVMLVSDAD LQECLEILDF LGTRTVKFLV RDTPQTIGSS GSSNCYLTGG  960
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein