PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027167205.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 272aa    MW: 31971.6 Da    PI: 7.1339
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027167205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53e-18449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
   XP_027167205.1  4 RGHWRPAEDEKLRELVEKYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                     899*****************************.***********996 PP
2Myb_DNA-binding53.55.5e-175699146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r ++T+eE+ell+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
   XP_027167205.1 56 RSPFTEEEEELLLASHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                     789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MCSRGHWRPA EDEKLRELVE KYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEELLLAS HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MARRCRERSK MYAKRAAQAS  120
RTDQQKSESP KQDMQASSNQ IKCSFSPILF ENNYSQRLHQ YPLTFSTCSP YLKELLSQKH  180
IHDMNMSRDK DKNEPVEFYD FLQVNADSNR SEVIDNVARK EDEEVEQESI LEHDHQTKTG  240
VPFIDFFSAG GDQYSEIISE GCNYNHSEKV YY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-87MYB family protein