PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167253.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 845aa MW: 93514.1 Da PI: 4.4711

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.9	1.4e-16	41	132	1	100
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkvl+ d ++ + l lp+kfa++ ++ + ++ +led++g +W v+l+ k+s +++GW eF +++L++gDf++F +++ + f vv XP_027167253.1 41 FFKVLVG-DDFS-QFLLLPRKFADTVMYLAN--QETKLEDSNGVQWIVTLSLVKNS--LAFSRGWPEFSLDHNLQAGDFLLFNYIKGTHF--VVY 127 7777733.4444.459*****99977744..489**********666666..789*******************987777..* PP EE-SS CS B3 96 vfrks 100 +f+ks XP_027167253.1 128 IFDKS 132 **985 PP

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence
MQLREQEREM VVMAGACEEC IRNCQLTHRN KMDLSPSVTR FFKVLVGDDF SQFLLLPRKF 60 ADTVMYLANQ ETKLEDSNGV QWIVTLSLVK NSLAFSRGWP EFSLDHNLQA GDFLLFNYIK 120 GTHFVVYIFD KSCCERASDK IGLPRKRART RGSISSGGKP CEKIDTNPIN RQNSSTSGVS 180 GSNSKNSHIL PTTTNSTLNA EGGNGNWSFL DSSFDMMIDW DAGPGPGERR MCLYDLSEFE 240 LQGDKEVADT DKGIDAVQST SGHTQTSMRS QDEADKDPTG TKVGTKDLKI ATFTEETDMG 300 MMVNEKDLEA KDDMLLERDT DKGIDAVQGT SDHTQTSLRC QNGADKDPTG PEDLKLATFT 360 EENDIGVMVN DDDLKPEDGV LLKCDTDKGI DAVQGSSGHS QTSLRCQDGA DKDPTGAEDL 420 KIATITEEAD IGMMVNVNNL EAEDDMLSER DSDRGINAVQ GTSDHGIGMM VNYDELKPED 480 GMLLKCDTDK GIDAVQGPSD HSQTSLRCQD GADKDPPGTE DLKIATFTEE TDIGMMVNDN 540 SLEAKDGMLS EHDSNRGINA VQGTSDHREV SLRCQDGADK DPTRSKDLET ATFTEETDIG 600 MLVNDYNLGG KDDILLECEK VPLADRSNSL PTVLCPELGE KGGNMSNVYI QLQNAERSNK 660 KYDVDWSSPY ADEGACFRDS QEEFAGETKK MVRKEHPDTR EEGDSSAKRL RGLKPLSVKE 720 IGSSSQGPCA CKPVKLEPVD LLDIPSSVAE SLTCLAMMDG RPYLELPSKL PGITYRKGMD 780 RKSVLLQDQE KRFWPALYYY RSGFHVLTGC WDKFNKEHRI QAGDHYIFQA EHVYRGIYKV 840 SVLHQ

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence

MQLREQEREM VVMAGACEEC IRNCQLTHRN KMDLSPSVTR FFKVLVGDDF SQFLLLPRKF  60
ADTVMYLANQ ETKLEDSNGV QWIVTLSLVK NSLAFSRGWP EFSLDHNLQA GDFLLFNYIK  120
GTHFVVYIFD KSCCERASDK IGLPRKRART RGSISSGGKP CEKIDTNPIN RQNSSTSGVS  180
GSNSKNSHIL PTTTNSTLNA EGGNGNWSFL DSSFDMMIDW DAGPGPGERR MCLYDLSEFE  240
LQGDKEVADT DKGIDAVQST SGHTQTSMRS QDEADKDPTG TKVGTKDLKI ATFTEETDMG  300
MMVNEKDLEA KDDMLLERDT DKGIDAVQGT SDHTQTSLRC QNGADKDPTG PEDLKLATFT  360
EENDIGVMVN DDDLKPEDGV LLKCDTDKGI DAVQGSSGHS QTSLRCQDGA DKDPTGAEDL  420
KIATITEEAD IGMMVNVNNL EAEDDMLSER DSDRGINAVQ GTSDHGIGMM VNYDELKPED  480
GMLLKCDTDK GIDAVQGPSD HSQTSLRCQD GADKDPPGTE DLKIATFTEE TDIGMMVNDN  540
SLEAKDGMLS EHDSNRGINA VQGTSDHREV SLRCQDGADK DPTRSKDLET ATFTEETDIG  600
MLVNDYNLGG KDDILLECEK VPLADRSNSL PTVLCPELGE KGGNMSNVYI QLQNAERSNK  660
KYDVDWSSPY ADEGACFRDS QEEFAGETKK MVRKEHPDTR EEGDSSAKRL RGLKPLSVKE  720
IGSSSQGPCA CKPVKLEPVD LLDIPSSVAE SLTCLAMMDG RPYLELPSKL PGITYRKGMD  780
RKSVLLQDQE KRFWPALYYY RSGFHVLTGC WDKFNKEHRI QAGDHYIFQA EHVYRGIYKV  840
SVLHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	150	PRKRART

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	3e-11	B3 family protein