PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167390.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 1027aa MW: 114956 Da PI: 6.0392

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.5	4.1e-10	420	463	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT Ed+ l+++v+q G +W Ia mg++Rt+ qc r+q XP_027167390.1 420 SWTSTEDKNLLHVVQQKGLSNWIDIAVSMGTNRTPFQCLARYQR 463 7*****************************************96 PP
2	Myb_DNA-binding	40.7	5.5e-13	472	515	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd +l av+ +G +W +a+ m gR + qc +rw k XP_027167390.1 472 REWTEEEDNQLRAAVEAFGESNWQVVASAME-GRIGTQCSNRWMK 515 68***************************.*********98 PP
3	Myb_DNA-binding	59.5	7.2e-19	525	569	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+WT+eEd++l+ av ++G++tWk+Iar ++ gRt qc++rw + XP_027167390.1 525 GKWTPEEDKRLKVAVMLFGPKTWKKIARFVP-GRTQVQCRERWVNC 569 79***************************.*********986 PP
4	Myb_DNA-binding	48.6	1.9e-15	576	621	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r+ WT+eEd +l+ a++++G W+++a++++ Rt+ qc+ rw +l XP_027167390.1 576 RNDWTQEEDSKLKAAIEEHGYC-WSKVAACVP-PRTDSQCRRRWKVLL 621 789***************99.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence
MSLNDDEEEE SSGSDADDGF DEDMEALRRA CLLTGTNVDD LENPCSPSPA VTATTSGAAA 60 TTGSDSDADD AEDDLELVRN IQKRFAIVTD NALEPLTLEP LYSIHPSANE DDDFETLRAI 120 QRRFFAYSEG GLGESTEVVS HKPENSNLQE ESPSYLDKIN NATKDIEACS KVNAGTQPSD 180 FSEWHDSDSV NAAILPVKGS SFPKAAEAFV DAIKKNRSCQ KLIRSKLLHI ETRIEELKKL 240 KERVKILKDF QATCRKRVGQ ALSQKKDARV QLISVPKLSA NVQLSQKKSS PMQYGPAENS 300 QVANYREALE KFPVSVIRNK WSKEEREKLS NGVKQQFQKM LLQRSVDLLS DGDGSFDDSD 360 NLDSIVASIR DLDITPDKMR QFLPKVNWDE LASMYLPGRS GAECQARWLN CEDPLINQNS 420 WTSTEDKNLL HVVQQKGLSN WIDIAVSMGT NRTPFQCLAR YQRSLNASII KREWTEEEDN 480 QLRAAVEAFG ESNWQVVASA MEGRIGTQCS NRWMKSLHPA RQRVGKWTPE EDKRLKVAVM 540 LFGPKTWKKI ARFVPGRTQV QCRERWVNCL DPSLNRNDWT QEEDSKLKAA IEEHGYCWSK 600 VAACVPPRTD SQCRRRWKVL LPHEVPWLQA AKKMQRAALI SNFVDRESER PGLLPSDFVP 660 LPEITCTSES ERINLSGHQN WGLSDLCSEE VLASGTVVES FTGDSISRRK RQKRKSRRTN 720 PIASSEEHLS YCPDTMHSSE TMHSNDLETL GGFNHCQNRS SQKSKGMASG YKCTSKKRAR 780 RTHPKRDGCS DSVDRISSSN NVNSLIMTGG EETRELVRDD GSGTQCKQDF DQHPSYSRCN 840 KSLEENGGCN DTEGHQLSFD NPNLLLIAKG EEAVEVNRSD GVATFGQKAS KLHPRRSGHN 900 EPPDGIPGIS FPNTAEFDVV HDTVVNKQRS ETKSTPEKSE STNAVDHHSS SLLNSTVEKD 960 LGTSGVIGSK RGKRSRNRDE ISVVEETEND DMTLAEFCNK RLAAENTGDD DMTLAMFCNM 1020 IKKRRRG

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence

MSLNDDEEEE SSGSDADDGF DEDMEALRRA CLLTGTNVDD LENPCSPSPA VTATTSGAAA  60
TTGSDSDADD AEDDLELVRN IQKRFAIVTD NALEPLTLEP LYSIHPSANE DDDFETLRAI  120
QRRFFAYSEG GLGESTEVVS HKPENSNLQE ESPSYLDKIN NATKDIEACS KVNAGTQPSD  180
FSEWHDSDSV NAAILPVKGS SFPKAAEAFV DAIKKNRSCQ KLIRSKLLHI ETRIEELKKL  240
KERVKILKDF QATCRKRVGQ ALSQKKDARV QLISVPKLSA NVQLSQKKSS PMQYGPAENS  300
QVANYREALE KFPVSVIRNK WSKEEREKLS NGVKQQFQKM LLQRSVDLLS DGDGSFDDSD  360
NLDSIVASIR DLDITPDKMR QFLPKVNWDE LASMYLPGRS GAECQARWLN CEDPLINQNS  420
WTSTEDKNLL HVVQQKGLSN WIDIAVSMGT NRTPFQCLAR YQRSLNASII KREWTEEEDN  480
QLRAAVEAFG ESNWQVVASA MEGRIGTQCS NRWMKSLHPA RQRVGKWTPE EDKRLKVAVM  540
LFGPKTWKKI ARFVPGRTQV QCRERWVNCL DPSLNRNDWT QEEDSKLKAA IEEHGYCWSK  600
VAACVPPRTD SQCRRRWKVL LPHEVPWLQA AKKMQRAALI SNFVDRESER PGLLPSDFVP  660
LPEITCTSES ERINLSGHQN WGLSDLCSEE VLASGTVVES FTGDSISRRK RQKRKSRRTN  720
PIASSEEHLS YCPDTMHSSE TMHSNDLETL GGFNHCQNRS SQKSKGMASG YKCTSKKRAR  780
RTHPKRDGCS DSVDRISSSN NVNSLIMTGG EETRELVRDD GSGTQCKQDF DQHPSYSRCN  840
KSLEENGGCN DTEGHQLSFD NPNLLLIAKG EEAVEVNRSD GVATFGQKAS KLHPRRSGHN  900
EPPDGIPGIS FPNTAEFDVV HDTVVNKQRS ETKSTPEKSE STNAVDHHSS SLLNSTVEKD  960
LGTSGVIGSK RGKRSRNRDE ISVVEETEND DMTLAEFCNK RLAAENTGDD DMTLAMFCNM  1020
IKKRRRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	708	718	RRKRQKRKSRR
2	710	718	KRQKRKSRR
3	712	718	QKRKSRR
4	973	978	KRSRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein