PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167628.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 284aa MW: 32124 Da PI: 8.4885

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.4	4.6e-24	40	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWtkqe+l Lie+++ e++ r+g+ + +p+W++vs+++r +g++r+p+qC+++w+nl ++kki+++e++ ++e +s + + ++l+ XP_027167628.1 40 RWTKQETLILIEGKNIAESQGRKGRrsssifvtgQHEPKWDSVSSYCRLHGVNRGPVQCRKRWSNLVSDFKKIRTWESQVKEEGESFWMMRNDLR 134 8************9999999886667888888********************************************999999999999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MAPGPNDRLE KATSSASVLD EEHQAVERTN SENKSTRHPR WTKQETLILI EGKNIAESQG 60 RKGRRSSSIF VTGQHEPKWD SVSSYCRLHG VNRGPVQCRK RWSNLVSDFK KIRTWESQVK 120 EEGESFWMMR NDLRREKKLP GHFDREVHAV LNGNSYQAVM GMSVDGREAV GTCVADTEDD 180 DEEDVNRGIE TGVVFDSGTH ARPETLISHL EKCAQGKIFR GPNVQVARES PRSNSPAPMP 240 LSGLIHAQVS FHPRLQQATN LVDCSKLPPT SFYLLFYTFK RYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-57	Trihelix family protein