PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027168025.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 749aa    MW: 84136.4 Da    PI: 6.037
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027168025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.43e-1043797464373
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lL++cA++v+++d++ a++ L++++++as  gdp qRla+ +++AL+arla+++  l  al++++ s   ++++l+a++++  +sP+     + a
  XP_027168025.1 379 LLISCAQFVAADDHRTATEKLKQIRQHASCLGDPHQRLAFILVNALEARLAGTGRDLHVALTSKRIS---TADQLKAYRVYL-CSPLRPTFSFFA 469
                     8***************************************************999999888888887...899999999865.99**999999** PP

            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     N++Ilea+++++ +Hi+Df+i+ G+QWp+L+q+L++R++gpp+lRiTg++ p++g   +e++++tg+rLak++e+++vpfe++++++++++++++
  XP_027168025.1 470 NEMILEAASRATILHIVDFGITFGFQWPTLIQQLSNRDGGPPKLRITGIDFPQPGfrPAESMQQTGHRLAKYCERFNVPFEYQAIATRNWDKITI 564
                     ******************************************************9*****************************9999******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     eeL++ ++E+laV +++ l+++ d+ v+ e +rd+vL+l++ ++P+++v     a+++++ Fl+rf +al+++ ++fd+++++lpr++ +r+k E
  XP_027168025.1 565 EELKLTRNEVLAVACQFGLKNISDDMVEGECPRDAVLSLIRAMNPDILVTDVLSAQLSGPFFLTRFRDALSFFLTMFDAIDNNLPRKDAQRMKFE 659
                     *********************************************************************************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +e+lg ++ n+vaceg +r+er+et++kW++r ++aGF+++pl+++  k+ +  ++k + + ++++e+  ++++gWk++ + ++S+W
  XP_027168025.1 660 QEFLGTQLLNIVACEGLARVERCETYRKWHARYNRAGFRQLPLNQDLLKELRGKVKKAYHKDFMLDEDGCWMLQGWKGKIISACSCW 746
                     ***********************************************************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    
MDHQFLNLNG SGSDGTVVSS LEQSELNFQL QKVWDPVKRF GFNDGIVFGS LDPEPLDPSS  60
FAPFFNVSTE VDFPDEHECY PVLKHINQML MEENLEEQQS MSTDPLALQA AEKSLYEILG  120
KNYPHSPRAT FVTALENNAH TPDCFSESSS NHVANCSDSG SNSAASWPIP ELSELSGKQG  180
HHLVNSCKSS FHTNSVQCLH MLKNSTICGN GQVASLTDEN LIPSFYSNHE TMMLFKRGLE  240
EGKKFLPSGN QLVVDLDKHT LSLKLELLAE KKKDEVEKLA EISGGRKHQN QDDDDSLRGR  300
SNKQSATSEE EVELSELLDR VLLHADSKGL EAYSDVDVEQ PNGSFKTLSR SKFLHRSRVG  360
MSPEKRLGAE GEALDLFGLL ISCAQFVAAD DHRTATEKLK QIRQHASCLG DPHQRLAFIL  420
VNALEARLAG TGRDLHVALT SKRISTADQL KAYRVYLCSP LRPTFSFFAN EMILEAASRA  480
TILHIVDFGI TFGFQWPTLI QQLSNRDGGP PKLRITGIDF PQPGFRPAES MQQTGHRLAK  540
YCERFNVPFE YQAIATRNWD KITIEELKLT RNEVLAVACQ FGLKNISDDM VEGECPRDAV  600
LSLIRAMNPD ILVTDVLSAQ LSGPFFLTRF RDALSFFLTM FDAIDNNLPR KDAQRMKFEQ  660
EFLGTQLLNI VACEGLARVE RCETYRKWHA RYNRAGFRQL PLNQDLLKEL RGKVKKAYHK  720
DFMLDEDGCW MLQGWKGKII SACSCWIPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-158GRAS family protein