PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027168169.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 761aa MW: 84174.1 Da PI: 6.3965

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027168169.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.5	1.7e-21	107	162	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k XP_027168169.1 107 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 162 7999************************************************9877 PP
2	START	217.9	3.4e-68	279	501	3	206
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ++a++el ++a++++p+W +s e++n+de+++kf+ +++ +++ea+r++g+v+ +l++lv+ ++d++ qW+e+++ ka+t++ XP_027168169.1 279 VNQALEELKQMATLGQPLWIRSLesgrEILNYDEYMKKFPFENAnnagpkRPIEASRETGIVFVELPRLVQCFMDVN-QWKEMFPgrvsKAATVD 372 678999*******************************9888899***************************.************* PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 v++ g g +qlm+aelq+l+p+vp R+++fvRy++q +a++w+ivdvS+d ++ ++s+ +++++pSg++ie+ksngh+kvtwveh + XP_027168169.1 373 VVCMGeganrdGLVQLMFAELQMLTPMVPtREVYFVRYSKQISADQWAIVDVSIDKVEDSV-DASLTKCRKRPSGCIIEDKSNGHCKVTWVEHLE 466 *******************************************************99.9**************************** PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++h+l+r +v+sgla+ga++w+ tlq qce+ XP_027168169.1 467 CQKSTVHSLYRAVVNSGLAFGARHWMTTLQLQCER 501 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence
MGVLDMSNPP PTSQTKDFFP SPALSLSLAG IFRRGAAAAN LEVEEGDEGS GGGGAAAGGG 60 RREETVEISS ENSGPLRSRS DDMDDYEGEG EQDDGGEDDQ NNKKKKRKKY HRHTAEQIRE 120 MEALFKESPH PDEKQRQQLS KQLGLHPRQV KFWFQNRRTQ IKAIQERHEN GLLKTELEKL 180 RDENKALRET IQKASCPSCG FATSAKGPST ASDEQQLRIE NARLKAEVEK LRAALGRYTP 240 GTSPSNSSCS AGNEFENRSC LEFYSGIFGL EKSRIMEIVN QALEELKQMA TLGQPLWIRS 300 LESGREILNY DEYMKKFPFE NANNAGPKRP IEASRETGIV FVELPRLVQC FMDVNQWKEM 360 FPGRVSKAAT VDVVCMGEGA NRDGLVQLMF AELQMLTPMV PTREVYFVRY SKQISADQWA 420 IVDVSIDKVE DSVDASLTKC RKRPSGCIIE DKSNGHCKVT WVEHLECQKS TVHSLYRAVV 480 NSGLAFGARH WMTTLQLQCE RLAFFMATNV PTKDSSGVAT LAGRKSILKL AHRMTVSFCR 540 APGASSYNTW SKITSKSGDD IRVASRKNLN DPGEPLGVIL CAVSSVWLPV SHHDLFDFLR 600 DESRRNEWDM MLNGAPAQSI ANLAKGQDRG NAVTIQTIKT KDNSMWVLQD SCTNAYESMV 660 VYAPVDISSM QSVMTGCDSS NIAVLPSGFS ILLDGVESRP LVITSRLEEK SSEGGSLLTI 720 AFQILTSNSP TAKPSVESLE SVNTLISCTL QKIKASLNCE D

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence

MGVLDMSNPP PTSQTKDFFP SPALSLSLAG IFRRGAAAAN LEVEEGDEGS GGGGAAAGGG  60
RREETVEISS ENSGPLRSRS DDMDDYEGEG EQDDGGEDDQ NNKKKKRKKY HRHTAEQIRE  120
MEALFKESPH PDEKQRQQLS KQLGLHPRQV KFWFQNRRTQ IKAIQERHEN GLLKTELEKL  180
RDENKALRET IQKASCPSCG FATSAKGPST ASDEQQLRIE NARLKAEVEK LRAALGRYTP  240
GTSPSNSSCS AGNEFENRSC LEFYSGIFGL EKSRIMEIVN QALEELKQMA TLGQPLWIRS  300
LESGREILNY DEYMKKFPFE NANNAGPKRP IEASRETGIV FVELPRLVQC FMDVNQWKEM  360
FPGRVSKAAT VDVVCMGEGA NRDGLVQLMF AELQMLTPMV PTREVYFVRY SKQISADQWA  420
IVDVSIDKVE DSVDASLTKC RKRPSGCIIE DKSNGHCKVT WVEHLECQKS TVHSLYRAVV  480
NSGLAFGARH WMTTLQLQCE RLAFFMATNV PTKDSSGVAT LAGRKSILKL AHRMTVSFCR  540
APGASSYNTW SKITSKSGDD IRVASRKNLN DPGEPLGVIL CAVSSVWLPV SHHDLFDFLR  600
DESRRNEWDM MLNGAPAQSI ANLAKGQDRG NAVTIQTIKT KDNSMWVLQD SCTNAYESMV  660
VYAPVDISSM QSVMTGCDSS NIAVLPSGFS ILLDGVESRP LVITSRLEEK SSEGGSLLTI  720
AFQILTSNSP TAKPSVESLE SVNTLISCTL QKIKASLNCE D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	108	KKKKRK
2	103	109	KKKKRKK
3	105	109	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein