PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027168237.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 159aa MW: 17742 Da PI: 8.2652

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027168237.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.3	1.7e-10	64	90	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++tG Cky ++C+F+H++ XP_027168237.1 64 PGQPDCSYFLKTGDCKYKANCRFNHPK 90 5789*********************96 PP
2	zf-CCCH	38.7	1.7e-12	111	136	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+ r+G+Ck+G+ CkF H++ XP_027168237.1 111 DQSICSFYNRYGICKFGPACKFDHPE 136 6789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence
MIFPPAQGMP SNAEWNGYQA TVYPTSERSL PTPPAFAMNN PVSETNFYAP LQQQMPVDEY 60 PQRPGQPDCS YFLKTGDCKY KANCRFNHPK FQSSKSTSCA LSDKGLPLRP DQSICSFYNR 120 YGICKFGPAC KFDHPENWGK SVASGGVRMA RNEMEAGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	2e-48	C3H family protein