PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027168315.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 383aa MW: 43598.5 Da PI: 5.6212

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027168315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl XP_027168315.1 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.3	1e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_027168315.1 67 RGMFSQQEEDLILRLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MGRHSCCVKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLILR LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPITHQPLS ENEGRDHEEK NSTDNRASLQ MVPSSSGLLP NLPSSGMEKA YPITSTTSSY 180 CLGGNTEFSR DQQMVSKQVL DPLFLLEFQA TIDPCGYDKF LSTQYQYTMR PQNQSTEFEG 240 NVNYAYGSMP TLTNFDQRSV TDTDFSDSSN SRMSSFLMNE AKESSSNSTS NINSGHPSIQ 300 IHTMAAESAN VFSWEADHQN KFDSVFDYQQ QFNEIKIEED HKPRPWQEGQ LQAHNSGDFS 360 NYPLTSLSEE DLSGASLDVF HQI

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MGRHSCCVKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLILR LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPITHQPLS ENEGRDHEEK NSTDNRASLQ MVPSSSGLLP NLPSSGMEKA YPITSTTSSY  180
CLGGNTEFSR DQQMVSKQVL DPLFLLEFQA TIDPCGYDKF LSTQYQYTMR PQNQSTEFEG  240
NVNYAYGSMP TLTNFDQRSV TDTDFSDSSN SRMSSFLMNE AKESSSNSTS NINSGHPSIQ  300
IHTMAAESAN VFSWEADHQN KFDSVFDYQQ QFNEIKIEED HKPRPWQEGQ LQAHNSGDFS  360
NYPLTSLSEE DLSGASLDVF HQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	2e-82	MYB family protein