PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027168673.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 526aa MW: 57531.5 Da PI: 5.1907

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027168673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.4e-11	214	237	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF+H+p XP_027168673.1 214 EDCAYYMKTGSCKFGMNCKFNHPP 237 79********************97 PP
2	zf-CCCH	28.9	2e-09	260	284	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ +G Ck+G+ Ck++H++ XP_027168673.1 260 QTECKYYLTSGGCKFGSACKYNHSR 284 568********************95 PP
3	zf-CCCH	41.9	1.6e-13	306	330	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG++CkF+H+ XP_027168673.1 306 GEKECPYYMRTGSCKYGSNCKFNHP 330 6789********************9 PP
4	zf-CCCH	30.1	8.2e-10	431	457	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++tG Cky ++C+F+H++ XP_027168673.1 431 PGQPDCSYFLKTGDCKYKANCRFNHPK 457 5789*********************96 PP
5	zf-CCCH	36.5	8.3e-12	478	503	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+ r+G+Ck+G+ CkF H++ XP_027168673.1 478 DQSICSFYNRYGICKFGPACKFDHPE 503 6789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MGGGASTTME SKPSEENQHF QCSEHQNPQN GVAPQNPQSA ERGLVKPQSS EPETTPVSSS 60 DHHLTVIGAE LKPQMLPVES KGGSGAGDEI DGQNGLDEDG ILRKTLDEEI HQVIYKEALN 120 EAVMNLALGE DRNGEVEVGL GMGTNGEEFW EGGSDVLRGR GVDVDELFQG RYGNDEVGGE 180 VEGEENYGTE EASGYSGDRT YNRRFEYPLR LDAEDCAYYM KTGSCKFGMN CKFNHPPKRR 240 NQGTRDKAKP RVEDSERLGQ TECKYYLTSG GCKFGSACKY NHSREKSALA PVVEFNFLGL 300 PIRPQGEKEC PYYMRTGSCK YGSNCKFNHP DPTSVAGNDH ASGFVAGGSA QLHGAAQTSA 360 SSWSSASMIF PPAQGMPSNA EWNGYQATVY PTSERSLPTP PAFAMNNPVS ETNFYAPLQQ 420 QMPVDEYPQR PGQPDCSYFL KTGDCKYKAN CRFNHPKFQS SKSTSCALSD KGLPLRPDQS 480 ICSFYNRYGI CKFGPACKFD HPENWGKSVA SGGVRMARNE MEAGFS

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MGGGASTTME SKPSEENQHF QCSEHQNPQN GVAPQNPQSA ERGLVKPQSS EPETTPVSSS  60
DHHLTVIGAE LKPQMLPVES KGGSGAGDEI DGQNGLDEDG ILRKTLDEEI HQVIYKEALN  120
EAVMNLALGE DRNGEVEVGL GMGTNGEEFW EGGSDVLRGR GVDVDELFQG RYGNDEVGGE  180
VEGEENYGTE EASGYSGDRT YNRRFEYPLR LDAEDCAYYM KTGSCKFGMN CKFNHPPKRR  240
NQGTRDKAKP RVEDSERLGQ TECKYYLTSG GCKFGSACKY NHSREKSALA PVVEFNFLGL  300
PIRPQGEKEC PYYMRTGSCK YGSNCKFNHP DPTSVAGNDH ASGFVAGGSA QLHGAAQTSA  360
SSWSSASMIF PPAQGMPSNA EWNGYQATVY PTSERSLPTP PAFAMNNPVS ETNFYAPLQQ  420
QMPVDEYPQR PGQPDCSYFL KTGDCKYKAN CRFNHPKFQS SKSTSCALSD KGLPLRPDQS  480
ICSFYNRYGI CKFGPACKFD HPENWGKSVA SGGVRMARNE MEAGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-104	C3H family protein