PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027168734.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 375aa MW: 42027.5 Da PI: 8.365

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027168734.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.2e-09	203	250	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq XP_027168734.1 203 SHSLAERVRREKISERMKILQALVPGC----DKVTGKALMLDEIINYVQSLQ 250 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MATFSYQHQQ PLHLESSSGL FLESSSQMRM SAGLLEEPNM TRMTTTTTSF PQFYRPDHFL 60 HQEIPSKSYV NESTCSIFDQ SCTKVTHFSN NGPSLTNKTS TDSSSVTDKL ESGEQVTQKV 120 HAAAMDKKRK TKKGPLPVNS AQSKAIGDQL AKGKKQRKCG RIMKEVEDKK SNEDKKVPEK 180 AAEEAPPTGY IHVRARRGQA TDSHSLAERV RREKISERMK ILQALVPGCD KVTGKALMLD 240 EIINYVQSLQ NQVEFLSMKL ASLNPMFYDF GMDLDPYIAR PEPTLSNMAS PVQNMQQCDP 300 MQAPIISATN NSLRTDTANN YPQLDSSASA LLIQQSHHIP QILSQENGQL LWDVDDRRQK 360 LINQTGFNNN LCSFH

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MATFSYQHQQ PLHLESSSGL FLESSSQMRM SAGLLEEPNM TRMTTTTTSF PQFYRPDHFL  60
HQEIPSKSYV NESTCSIFDQ SCTKVTHFSN NGPSLTNKTS TDSSSVTDKL ESGEQVTQKV  120
HAAAMDKKRK TKKGPLPVNS AQSKAIGDQL AKGKKQRKCG RIMKEVEDKK SNEDKKVPEK  180
AAEEAPPTGY IHVRARRGQA TDSHSLAERV RREKISERMK ILQALVPGCD KVTGKALMLD  240
EIINYVQSLQ NQVEFLSMKL ASLNPMFYDF GMDLDPYIAR PEPTLSNMAS PVQNMQQCDP  300
MQAPIISATN NSLRTDTANN YPQLDSSASA LLIQQSHHIP QILSQENGQL LWDVDDRRQK  360
LINQTGFNNN LCSFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	154	KKRKTKKGPLPVNSAQSKAIGDQLAKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	6e-59	bHLH family protein