PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027168852.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 476aa MW: 52370.5 Da PI: 5.5112

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027168852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.7e-16	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ XP_027168852.1 55 REKWTEEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 99 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MVAEAPDLIE GTSHDVSLGM RAHLETTAAQ TQALTEMGNG YAPKVRKPYT IKKQREKWTE 60 EEHQRFLEAL KLYGRAWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSNEC EGSLNPIEIP 120 PPRPKKKPAH PYPRKVTDVT KAMLDDPHQP EQAPPFKRSG EERNSRSPTS VLSALGSDTS 180 GSPFSEPQRS HLSPVSYTTD DAHSAIVQLT ENDNECMTSD SSVEEEKEYG DAILLAASAT 240 QDDESAMELD LLTLGRACPA EDPAFEQAPA TIKLFGRMVE IKENQKLSSS APENSELSPS 300 HSMKEKLDIR NGRHMIGSAE NTIDSQVNLS LVPSCITPVA CLVPQYAVSE DFGQLGSIPH 360 MIPMWTWSHG PLLPNLSLSN QTAIENSVNN PYKGAVENEE PQREGSLTDS NSGLVTAAKS 420 GQKIFDAIQS KNLANVERQR STKGFVPYKR CLAERDATSS LVAAEEREGQ RARICS

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MVAEAPDLIE GTSHDVSLGM RAHLETTAAQ TQALTEMGNG YAPKVRKPYT IKKQREKWTE  60
EEHQRFLEAL KLYGRAWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSNEC EGSLNPIEIP  120
PPRPKKKPAH PYPRKVTDVT KAMLDDPHQP EQAPPFKRSG EERNSRSPTS VLSALGSDTS  180
GSPFSEPQRS HLSPVSYTTD DAHSAIVQLT ENDNECMTSD SSVEEEKEYG DAILLAASAT  240
QDDESAMELD LLTLGRACPA EDPAFEQAPA TIKLFGRMVE IKENQKLSSS APENSELSPS  300
HSMKEKLDIR NGRHMIGSAE NTIDSQVNLS LVPSCITPVA CLVPQYAVSE DFGQLGSIPH  360
MIPMWTWSHG PLLPNLSLSN QTAIENSVNN PYKGAVENEE PQREGSLTDS NSGLVTAAKS  420
GQKIFDAIQS KNLANVERQR STKGFVPYKR CLAERDATSS LVAAEEREGQ RARICS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-40	MYB_related family protein