PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027168853.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 457aa MW: 50447.4 Da PI: 5.9679

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027168853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.4e-16	36	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ XP_027168853.1 36 REKWTEEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 80 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MRAHLETTAA QTQALTEMGN GYAPKVRKPY TIKKQREKWT EEEHQRFLEA LKLYGRAWRQ 60 IEEHVGTKTA IQIRSHAQKF FAKVARDSNE CEGSLNPIEI PPPRPKKKPA HPYPRKVTDV 120 TKAMLDDPHQ PEQAPPFKRS GEERNSRSPT SVLSALGSDT SGSPFSEPQR SHLSPVSYTT 180 DDAHSAIVQL TENDNECMTS DSSVEEEKEY GDAILLAASA TQDDESAMEL DLLTLGRACP 240 AEDPAFEQAP ATIKLFGRMV EIKENQKLSS SAPENSELSP SHSMKEKLDI RNGRHMIGSA 300 ENTIDSQVNL SLVPSCITPV ACLVPQYAVS EDFGQLGSIP HMIPMWTWSH GPLLPNLSLS 360 NQTAIENSVN NPYKGAVENE EPQREGSLTD SNSGLVTAAK SGQKIFDAIQ SKNLANVERQ 420 RSTKGFVPYK RCLAERDATS SLVAAEEREG QRARICS

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MRAHLETTAA QTQALTEMGN GYAPKVRKPY TIKKQREKWT EEEHQRFLEA LKLYGRAWRQ  60
IEEHVGTKTA IQIRSHAQKF FAKVARDSNE CEGSLNPIEI PPPRPKKKPA HPYPRKVTDV  120
TKAMLDDPHQ PEQAPPFKRS GEERNSRSPT SVLSALGSDT SGSPFSEPQR SHLSPVSYTT  180
DDAHSAIVQL TENDNECMTS DSSVEEEKEY GDAILLAASA TQDDESAMEL DLLTLGRACP  240
AEDPAFEQAP ATIKLFGRMV EIKENQKLSS SAPENSELSP SHSMKEKLDI RNGRHMIGSA  300
ENTIDSQVNL SLVPSCITPV ACLVPQYAVS EDFGQLGSIP HMIPMWTWSH GPLLPNLSLS  360
NQTAIENSVN NPYKGAVENE EPQREGSLTD SNSGLVTAAK SGQKIFDAIQ SKNLANVERQ  420
RSTKGFVPYK RCLAERDATS SLVAAEEREG QRARICS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-40	MYB_related family protein