PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027168969.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 210aa    MW: 24061.1 Da    PI: 9.641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027168969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.81.7e-202875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l++a++ +G+++WktIa++ g++R++k+c++rw +yl
   XP_027168969.1 28 RGSWTDEEDRKLAEAIEIYGPKRWKTIASKAGLKRCGKSCRLRWMNYL 75
                     89********************************************97 PP
2Myb_DNA-binding51.91.7e-1681126148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_027168969.1  81 RGNISDQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 126
                      78999*****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MDDHESAKEE VNPAVMLKNQ SAEKGANRGS WTDEEDRKLA EAIEIYGPKR WKTIASKAGL  60
KRCGKSCRLR WMNYLRPHIK RGNISDQEED LIVRLHKLLG NRWSLIAGRL PGRTDNEIKN  120
YWNSHLSKKV HQKEKQSKGT AEMGCSRIRK KRKAMMNEVK ADRTREGNSS SGGAPGDSKL  180
SFDVDDFFDF SNEDPMTLEW ISKFTEMDDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.17e-54MYB family protein