PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027169345.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 253aa    MW: 28565.2 Da    PI: 4.8217
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027169345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS821e-258225241210
            GRAS  41 laayfteALaarlarsvselykalppsetseknsseelaalkl......fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129
                     ++ yf++AL++++ +   ++ ++ + + +++  ++eel    l       ++  P+   ++++  q Ileav  +++v   Df+i +G QW  ++
  XP_027169345.1  82 IVYYFAKALNEKIDQ-ALGIISSDKLKGQEWLPMAEELDKNFLepvimsCQQEVPFCLETQFISSQSILEAVTAAKKVRLMDFEIDNGSQWTLIM 175
                     578**********99.55555555555444444444444443333455689999***************************************** PP

            GRAS 130 qaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlql 210
                     +aLa     +   l+iT vg      + ++e++g+rL++ A+++++pf+f++ v+++l+dl+ e ++ + +Ea+a+ l+++l
  XP_027169345.1 176 EALAVHHeCPVELLKITDVGT----CEATMEKMGKRLSSSAQTINLPFSFKI-VVSDLKDLKEEFFNSEADEAVAIDLAYRL 252
                     ****877255569********....9*************************9.7999*******************998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MWYKVERLRD PQKLLEENPD TPNNSCCSQA LLTDKIMKLP KAQLVQLNSK KADVLSSGKV  60
ALEANAVYLP KLLKTLNLHC CIVYYFAKAL NEKIDQALGI ISSDKLKGQE WLPMAEELDK  120
NFLEPVIMSC QQEVPFCLET QFISSQSILE AVTAAKKVRL MDFEIDNGSQ WTLIMEALAV  180
HHECPVELLK ITDVGTCEAT MEKMGKRLSS SAQTINLPFS FKIVVSDLKD LKEEFFNSEA  240
DEAVAIDLAY RLW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.14e-16GRAS family protein