PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169364.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 420aa MW: 48248 Da PI: 6.5142

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.9e-16	180	226	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd llv++v+++G + W+ Ia+ + gR +kqc++rw+++l XP_027169364.1 180 KGQWTIEEDRLLVHLVEKFGVRKWSHIAQVLK-GRIGKQCRERWHNHL 226 799**************************9.***********97 PP
2	Myb_DNA-binding	57.1	4.2e-18	234	274	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+ XP_027169364.1 234 IWTEEEDRILIEAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 274 6*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MPANFLKPDI DQDFCMDNCQ SKGFLQDFQH LDHFSFTGSS FNPDLGIHTT GFDPFDPFFN 60 GSSMIDFNYL EFNPFEENDN NNGKLVTQNF EGGGGLLKHT VKETPLSDEN SSDHKLFPLT 120 LPEVKPLNFC VQDESSCITA ESVYYKEAGT KRNNNRFSNI ALSSSTKKQG RGRKKSKSAK 180 GQWTIEEDRL LVHLVEKFGV RKWSHIAQVL KGRIGKQCRE RWHNHLRPDI KKDIWTEEED 240 RILIEAHAEI GNKWAEIAKK LPGRTENSIK NHWNATKRRQ FSRRKCRTKW PKPSSLLQNY 300 IKSLNFEKSS SGRKNASTTD TPTIGDHKQN SNPNEEAMEL NSDPLVPDYD FSEVPEFALD 360 DNLFERTSIN NLNSEIHNAS PILDDKGFCM EIPYDVPPPI MQFEVKKELD LMEMISHVNQ

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MPANFLKPDI DQDFCMDNCQ SKGFLQDFQH LDHFSFTGSS FNPDLGIHTT GFDPFDPFFN  60
GSSMIDFNYL EFNPFEENDN NNGKLVTQNF EGGGGLLKHT VKETPLSDEN SSDHKLFPLT  120
LPEVKPLNFC VQDESSCITA ESVYYKEAGT KRNNNRFSNI ALSSSTKKQG RGRKKSKSAK  180
GQWTIEEDRL LVHLVEKFGV RKWSHIAQVL KGRIGKQCRE RWHNHLRPDI KKDIWTEEED  240
RILIEAHAEI GNKWAEIAKK LPGRTENSIK NHWNATKRRQ FSRRKCRTKW PKPSSLLQNY  300
IKSLNFEKSS SGRKNASTTD TPTIGDHKQN SNPNEEAMEL NSDPLVPDYD FSEVPEFALD  360
DNLFERTSIN NLNSEIHNAS PILDDKGFCM EIPYDVPPPI MQFEVKKELD LMEMISHVNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	3e-77	MYB family protein