PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169384.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 1692aa MW: 192254 Da PI: 8.7915

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169384.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	15	65	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + +Er+RR r++ ++eL +l+P+ +k++++ l+ + ++v YI +L XP_027169384.1 15 RKTIERNRRIRMKGLISELASLVPPqHFKPSKEMLNQKDQIDQVVTYIMQL 65 5789*******************777766666*************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1692 aa Download sequence
MENNCSNDAP RKLDRKTIER NRRIRMKGLI SELASLVPPQ HFKPSKEMLN QKDQIDQVVT 60 YIMQLKERVE KLNKRKEILK SEHQTKGTNP RNSAIPSSRI PVLKIRESDS SLEVVLVTGL 120 RKNFALHEVI QVLHGQGLEV VSVSISTIEE KIYHIVHAQV RVPRLGADTL TIYGELQYNP 180 EIEKTARALR KATRERAEAS SSSTGHNSVV DFVDSFSETE EIDSTMANER TLRELAAPDL 240 NQQPLCITYP TLEVAFELKS GLIHLLPSFH GLPGEDPHKH LKEFHVVCST MKPQGVTEEQ 300 IKLRAFPFSL ADKAKDWLYY LPSGSISTWT DMKKHFLEKF FPASRAASIR KDICGIRQFN 360 GETLHEYWER FKRIIDAASG GSLVNKTPTE ARNLISSMAA NAQQFGDRQD NTTRRVNELA 420 IGQMQQLKTC GICYGSSHPT DMCPTLQDDS TEQANAVGFP GPPQRRYDPY ANTYNPGWRD 480 HPNFNYAVRP PGFSHQSQYQ PRPQLSQQQP APKSVNRLES QLSGKLPSQT IVNPKQNASA 540 ITLRSGKELP EPSKKISEQA IEEELEKEGN VSQPRALEQP DFGEKSTQVV TPPPPFPSRL 600 AKSKKQEHEQ EILDTFRKVE VNIPLLDAIK QIPRYAKFLK ELCTGKKKLK GNEKVHMGEN 660 VSAVLQKKLP PKCKDPGMFT VPCKIGNIKI EKAMLDLGAS INVMPRSIYN LMNIRPLKET 720 GVIIQLADRS NAYPDGVLED ILVQIDNLIF PADFYVLDME DDNSNSSPIL LGRPFLKTAR 780 TKIDVFTGTL TMEFDGDVIK FNIYDAMKYP GESHSIFVID VIDSLAQQNF EFNNDDALKF 840 VFPFELQEVI FELNSLCPEF SNVSYLELPL SHSQLLPSIV QAPKVELKQL PDNLKYAFLG 900 DGDTLPVIIS SKLTALEEEK LIRVLKDHKE AIGWTVADIK GLSPATCMHR ILLEDGAKPS 960 REAQRRLNPP MMEVVKKEVL KLLDTGIIYP ISDSKWVSPV QVVPKKTGIT VIENPKGELV 1020 PTRVQNGWRV DKAKVEIIKC LPYPASVREV RSFLGHAGFY RRFIKDFSKI SHPLCKLLQK 1080 DVVFHFDDNC KSAFDTLKGS LTSAPVVRPP NWSLPFEIMC DASNFAVGAV LGQKEGRASY 1140 VIYYTSRTLD GAQCNYSTTE KELLAIVFAL EKFRSYLLGT KVIIYSDHAA LKYLLNKKEA 1200 KPRLIRWILL LQEFNLEIKD KRGAENMVAD HLSRLINSEG PAPLKDNFPD EHLFVVQKTT 1260 PWYADLVNYL VTRTLPNDLS RAQKEKIKSD VKYYVWDEPY LWKYCSDQII RRCVSTEEVP 1320 SILSFCHSYA CGGHFGPKRT ARKVLECGLF WPTLFSDAYL FCKSCANCQK TGNLSHRDQM 1380 PLTPILVCEI FDIWGIDFMG PFPSSFGNMY ILLAVDYVSK WIEAKATRTD NAKVVVDFIK 1440 SHIFVRYGTP RAIISDRGTH FCNRVMEALL KKYGVTHRVS TSYHPQTSGQ AEISNKEIKS 1500 ILEKTVNPNR KDWSLRLDDA LWAYRTAFKT PIGMSPYRLI FGKPCHLPVE LEHRAYWAVK 1560 NYNMRMDESG EHRKLQLQEL EEIRNDAYES SCIYKEKTKA FHDKAISRKI FCIGQKVLLF 1620 HSRLKLFPGK LRSRWIGPFI VTNVFPHGAV EIQSLHTDKI FKVNGHRLKP FYEGFQVNNV 1680 EEVTLAVPEL SD

Sequence ? help Back to Top

Protein Sequence Length: 1692 aa Download sequence

MENNCSNDAP RKLDRKTIER NRRIRMKGLI SELASLVPPQ HFKPSKEMLN QKDQIDQVVT  60
YIMQLKERVE KLNKRKEILK SEHQTKGTNP RNSAIPSSRI PVLKIRESDS SLEVVLVTGL  120
RKNFALHEVI QVLHGQGLEV VSVSISTIEE KIYHIVHAQV RVPRLGADTL TIYGELQYNP  180
EIEKTARALR KATRERAEAS SSSTGHNSVV DFVDSFSETE EIDSTMANER TLRELAAPDL  240
NQQPLCITYP TLEVAFELKS GLIHLLPSFH GLPGEDPHKH LKEFHVVCST MKPQGVTEEQ  300
IKLRAFPFSL ADKAKDWLYY LPSGSISTWT DMKKHFLEKF FPASRAASIR KDICGIRQFN  360
GETLHEYWER FKRIIDAASG GSLVNKTPTE ARNLISSMAA NAQQFGDRQD NTTRRVNELA  420
IGQMQQLKTC GICYGSSHPT DMCPTLQDDS TEQANAVGFP GPPQRRYDPY ANTYNPGWRD  480
HPNFNYAVRP PGFSHQSQYQ PRPQLSQQQP APKSVNRLES QLSGKLPSQT IVNPKQNASA  540
ITLRSGKELP EPSKKISEQA IEEELEKEGN VSQPRALEQP DFGEKSTQVV TPPPPFPSRL  600
AKSKKQEHEQ EILDTFRKVE VNIPLLDAIK QIPRYAKFLK ELCTGKKKLK GNEKVHMGEN  660
VSAVLQKKLP PKCKDPGMFT VPCKIGNIKI EKAMLDLGAS INVMPRSIYN LMNIRPLKET  720
GVIIQLADRS NAYPDGVLED ILVQIDNLIF PADFYVLDME DDNSNSSPIL LGRPFLKTAR  780
TKIDVFTGTL TMEFDGDVIK FNIYDAMKYP GESHSIFVID VIDSLAQQNF EFNNDDALKF  840
VFPFELQEVI FELNSLCPEF SNVSYLELPL SHSQLLPSIV QAPKVELKQL PDNLKYAFLG  900
DGDTLPVIIS SKLTALEEEK LIRVLKDHKE AIGWTVADIK GLSPATCMHR ILLEDGAKPS  960
REAQRRLNPP MMEVVKKEVL KLLDTGIIYP ISDSKWVSPV QVVPKKTGIT VIENPKGELV  1020
PTRVQNGWRV DKAKVEIIKC LPYPASVREV RSFLGHAGFY RRFIKDFSKI SHPLCKLLQK  1080
DVVFHFDDNC KSAFDTLKGS LTSAPVVRPP NWSLPFEIMC DASNFAVGAV LGQKEGRASY  1140
VIYYTSRTLD GAQCNYSTTE KELLAIVFAL EKFRSYLLGT KVIIYSDHAA LKYLLNKKEA  1200
KPRLIRWILL LQEFNLEIKD KRGAENMVAD HLSRLINSEG PAPLKDNFPD EHLFVVQKTT  1260
PWYADLVNYL VTRTLPNDLS RAQKEKIKSD VKYYVWDEPY LWKYCSDQII RRCVSTEEVP  1320
SILSFCHSYA CGGHFGPKRT ARKVLECGLF WPTLFSDAYL FCKSCANCQK TGNLSHRDQM  1380
PLTPILVCEI FDIWGIDFMG PFPSSFGNMY ILLAVDYVSK WIEAKATRTD NAKVVVDFIK  1440
SHIFVRYGTP RAIISDRGTH FCNRVMEALL KKYGVTHRVS TSYHPQTSGQ AEISNKEIKS  1500
ILEKTVNPNR KDWSLRLDDA LWAYRTAFKT PIGMSPYRLI FGKPCHLPVE LEHRAYWAVK  1560
NYNMRMDESG EHRKLQLQEL EEIRNDAYES SCIYKEKTKA FHDKAISRKI FCIGQKVLLF  1620
HSRLKLFPGK LRSRWIGPFI VTNVFPHGAV EIQSLHTDKI FKVNGHRLKP FYEGFQVNNV  1680
EEVTLAVPEL SD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	5e-19	bHLH family protein