PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027169483.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 25073.6 Da    PI: 9.9794
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027169483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  XP_027169483.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59
                    79***********************************************86 PP
2K-box109.92.8e-36801746100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        +e + +  ++ e+akLk++ie Lqr+qRh++GedL++Lsl+eLq+Le+qL+++lk+iRs+Kn+l++e+i elqkk k+lqe+n+ L kk++e
  XP_027169483.1  80 LGGAEIESQGCWSLEHAKLKARIEVLQRNQRHYMGEDLDNLSLRELQNLEHQLDTALKHIRSRKNQLMFESIAELQKKDKALQEQNNVLAKKVKE 174
                     55556677789*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYATD  60
SCMERILERY ERYSYAERQL GGAEIESQGC WSLEHAKLKA RIEVLQRNQR HYMGEDLDNL  120
SLRELQNLEH QLDTALKHIR SRKNQLMFES IAELQKKDKA LQEQNNVLAK KVKEKEKEQA  180
QQPQWEQQNR HDLNSSSLVR SQPINSLSIR YFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-96MIKC_MADS family protein