PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169627.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 496aa MW: 57604.8 Da PI: 8.1001

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.9	7.7e-14	1	82	10	90
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +GFsvrk ++ +ng++ r++vCs+eg+r+ ++ + ++++r++r+ tr++ +a+lk++ ++k++v++++ H+H+la XP_027169627.1 1 MGFSVRKGYKFID-DNGRVHYRQWVCSREGRRDLKHVNrEDRRREPRPDTRVDYQATLKIRYAFeEDKYVVSEFVRLHTHKLA 82 7*****98776.8999***********9988846677789*************99**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MGFSVRKGYK FIDDNGRVHY RQWVCSREGR RDLKHVNRED RRREPRPDTR VDYQATLKIR 60 YAFEEDKYVV SEFVRLHTHK LACPSTTKFL KCHRKVSDAN YAQAHTLCRV GMKTSQIMKL 120 CGGYQYVLFT MKDLYNRMNG GRMEEIADGD AKGVVAYLFT KKDADSEVYF NFTVTYNGRL 180 GRLFWLDSRS KEDYKYYGDI VVFNSIYNTN RYPYPLVVIY GINNHFCMFI FACLTVPDEE 240 VKTYEWILNN FLEVIDGKQP LSIVTNEAPQ MRKAIKMCFL NAKHRFCSCH IQRNLISNIA 300 NEEFRECSQE RHNKRTCPLE PNIVFDGLYE LSRLIGMSQD GLHGNLSPTW VQRGFELQSQ 360 TTCDLGQTPW VGVGQESHDI EGQGTQTGRE QEQADEDNDI DINFSLKFPT CCEWTKVKVM 420 EANPKTVSCR EPFSLHQKYV KDEDLILGHQ LEACLQLQIT SGPYSNVAVG IIAKSKLLRN 480 LMQILADFII HVRSRM

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MGFSVRKGYK FIDDNGRVHY RQWVCSREGR RDLKHVNRED RRREPRPDTR VDYQATLKIR  60
YAFEEDKYVV SEFVRLHTHK LACPSTTKFL KCHRKVSDAN YAQAHTLCRV GMKTSQIMKL  120
CGGYQYVLFT MKDLYNRMNG GRMEEIADGD AKGVVAYLFT KKDADSEVYF NFTVTYNGRL  180
GRLFWLDSRS KEDYKYYGDI VVFNSIYNTN RYPYPLVVIY GINNHFCMFI FACLTVPDEE  240
VKTYEWILNN FLEVIDGKQP LSIVTNEAPQ MRKAIKMCFL NAKHRFCSCH IQRNLISNIA  300
NEEFRECSQE RHNKRTCPLE PNIVFDGLYE LSRLIGMSQD GLHGNLSPTW VQRGFELQSQ  360
TTCDLGQTPW VGVGQESHDI EGQGTQTGRE QEQADEDNDI DINFSLKFPT CCEWTKVKVM  420
EANPKTVSCR EPFSLHQKYV KDEDLILGHQ LEACLQLQIT SGPYSNVAVG IIAKSKLLRN  480
LMQILADFII HVRSRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-38	FAR1 family protein