PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027170059.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 512aa MW: 57528 Da PI: 8.2375

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027170059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.5e-08	402	456	2	47
SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 ++WT E+e l+++v+++ ++ W++I + Rt+ ++k++w++ XP_027170059.1 402 LPWTDAEEEMLKEGVEKFSTDrnkniPWRKILEFGRhvfdGSRTPVDLKDKWRNI 456 69****************************998899*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MGWSEKDLCI KCDKGGKVLV CRDSRCPIVV HEKCLGFPAK FDEMGRFYCP YCVYRRAIEE 60 AHQAREKALS KKKALSKFLD TKMTNAEWQT QKTEISKGKE LSQLPGVDST GSLNSGSRPD 120 KINVHNHTAR LVEDQNEGRF APECSRLVLL SKETGESIRG DQNDVLCSNT SDIGGSSDCN 180 CRIVVVGHRT ESGPIVASGN ECVSSDREET IKRFEMVEIG NKVQLHSQWQ QDDFRGKVVD 240 DQLDDKNLRE SPAVENHGME NHLSPEAKRV GRDGDMLREY DGRLVGEEVE KEKVLESPAI 300 SPSHPALEMH LQEKRAGQTS DSICKDSNAA STGKASKQND KRKEQNAEAT CFRKLSQNSA 360 SHHRASLDQF EKIHACSKLR KLNKPAPQCS MILCPNARRK SLPWTDAEEE MLKEGVEKFS 420 TDRNKNIPWR KILEFGRHVF DGSRTPVDLK DKWRNILAKK QRGINRNSSC FLFTILASCA 480 GNFMHPINVR GYDTFCAKVN KCCMEKTESG GS

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MGWSEKDLCI KCDKGGKVLV CRDSRCPIVV HEKCLGFPAK FDEMGRFYCP YCVYRRAIEE  60
AHQAREKALS KKKALSKFLD TKMTNAEWQT QKTEISKGKE LSQLPGVDST GSLNSGSRPD  120
KINVHNHTAR LVEDQNEGRF APECSRLVLL SKETGESIRG DQNDVLCSNT SDIGGSSDCN  180
CRIVVVGHRT ESGPIVASGN ECVSSDREET IKRFEMVEIG NKVQLHSQWQ QDDFRGKVVD  240
DQLDDKNLRE SPAVENHGME NHLSPEAKRV GRDGDMLREY DGRLVGEEVE KEKVLESPAI  300
SPSHPALEMH LQEKRAGQTS DSICKDSNAA STGKASKQND KRKEQNAEAT CFRKLSQNSA  360
SHHRASLDQF EKIHACSKLR KLNKPAPQCS MILCPNARRK SLPWTDAEEE MLKEGVEKFS  420
TDRNKNIPWR KILEFGRHVF DGSRTPVDLK DKWRNILAKK QRGINRNSSC FLFTILASCA  480
GNFMHPINVR GYDTFCAKVN KCCMEKTESG GS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53790.1	2e-06	MYB_related family protein