PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027170117.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 243aa    MW: 26075.3 Da    PI: 4.84
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027170117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.43.3e-56411451102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl
  XP_027170117.1  41 QLQMFWNYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 135
                     89*****998899********************************************************************************** PP

           NF-YC  93 vdivprdelk 102
                     vdivprde+k
  XP_027170117.1 136 VDIVPRDEIK 145
                     *******975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MENNSQQAQA AAAAAAAAQT SAAAYPGQPP YHHLLQQQQQ QLQMFWNYQR QEIEQVNDFK  60
NHQLPLARIK KIMKADEDVR MISAEAPILF AKACELFILE LTIRSWLHAE ENKRRTLQKN  120
DIAAAITRTD IFDFLVDIVP RDEIKDEAAG LGVGVGVGMA PGGIPVGSAA SGVPYYYPPL  180
GQPAPPGVMI GRPAVDPSVY VQQPPPPSQA WQSVWQTSAA DDGSYATGGG ANGGSQGNLD  240
GQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-86NF-YC family protein