PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027170194.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 256aa    MW: 29415.4 Da    PI: 4.7776
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027170194.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  +v ++G  +W+  ++  g+ R++k+c++rw +yl
   XP_027170194.1 14 KGAWSEEEDNKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding59.29.2e-1967112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T eE++l++++++q+G++ W++Ia++++ gRt++++k++w+++l
   XP_027170194.1  67 RGKYTIEEEDLIIKLHEQYGNR-WSAIAAKLP-GRTDNDIKNHWHTHL 112
                      899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MVRAPSVDKN GVKKGAWSEE EDNKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LKPGVRRGKY TIEEEDLIIK LHEQYGNRWS AIAAKLPGRT DNDIKNHWHT HLKKRNKQTQ  120
LSERPQNMDD ADQNEQSSAM STSGSSTDQK REMDPNASAA DSLDAYTDIS SLSCDSTLFD  180
CVDWVADDSN SSVESLTEPF ESFWTEPFAL DTSFSNYISV DPWLPSTEEE FLYPFSSFLD  240
DGIDCFHELN NRKGDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-56MYB family protein