PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027170235.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 436aa MW: 47795.1 Da PI: 7.17

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027170235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6.2e-06	327	365	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_027170235.1 327 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 365 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MGSFGWPTEI VAARSSMDAS VSMSGGSMLF PAAVDHSSQK LQAHESSSAG GSGEGAMLPD 60 PNLQIMGLAL SSQTMDWNQA ALFRGEKPQS SFRSMLQEDA STNFQQESGV TSSQDHQWRH 120 KLYAGSPDDS SVITEFKPMN QRGLSLDQPQ FSSNMSSSNS TITCQGLSPN FQVESASYAA 180 SPNSILQGLL VPDHHHQQQQ QSMNYSYPTS YGMESTSNQL MPSNSWSKFP QFLRNSPPKQ 240 QPPHGQLHFS NNTPFWNASS TGMSDVRSSL FPPLQTQLPM PNFEEKSKNA SEVRDLPVAK 300 KSSSSSSAPS NKRPRNETPA PMPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE 360 YIKFLHDQVN VLSTPYMKSG APMQHQQNPD KSKDPEGPKQ DLRSRGLCLV PVSSTFPVTH 420 ETAVDYWTPT FGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MGSFGWPTEI VAARSSMDAS VSMSGGSMLF PAAVDHSSQK LQAHESSSAG GSGEGAMLPD  60
PNLQIMGLAL SSQTMDWNQA ALFRGEKPQS SFRSMLQEDA STNFQQESGV TSSQDHQWRH  120
KLYAGSPDDS SVITEFKPMN QRGLSLDQPQ FSSNMSSSNS TITCQGLSPN FQVESASYAA  180
SPNSILQGLL VPDHHHQQQQ QSMNYSYPTS YGMESTSNQL MPSNSWSKFP QFLRNSPPKQ  240
QPPHGQLHFS NNTPFWNASS TGMSDVRSSL FPPLQTQLPM PNFEEKSKNA SEVRDLPVAK  300
KSSSSSSAPS NKRPRNETPA PMPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE  360
YIKFLHDQVN VLSTPYMKSG APMQHQQNPD KSKDPEGPKQ DLRSRGLCLV PVSSTFPVTH  420
ETAVDYWTPT FGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-73	bHLH family protein