PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027170550.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 323aa    MW: 35911.6 Da    PI: 7.314
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027170550.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l  +++q+G+++W++I+++ g+ R++k+c++rw +yl
   XP_027170550.1 14 RGQWTPEEDHKLSSYIAQHGTRNWRLIPKHAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding452.5e-1468110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  E++ +v ++  lG++ W+ Ia+ ++ gRt++++k++w++
   XP_027170550.1  68 GQFSDAEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 110
                      7899*****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGRIPCCEKD NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDAEEQTIVT LHSVLGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLITEIATTL APPQVPHLAE AALGCFKDEM LHLLTKKRIG SYQMQQIGLT  180
PVNTAATQVK HEDRDETIEK IKYGISRAIK DPETSPTNKP WDPVVAGPAN FAGSCNAFAA  240
PDSGFHYGLS SLVNEGNGSA WNQSMCPGSS ATGDRQCQLD EKLEDENGQD WKGGKEMRDG  300
ATLFNSDCVL WDLPSEELMS PMV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-114MYB family protein