PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027171141.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19444.5 Da    PI: 10.3106
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027171141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.6e-181863449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    e + n +vtfskRrng++ KA+EL++L++aeva+++fs+  + y +
  XP_027171141.1 18 EKNNNLHVTFSKRRNGLFMKANELCTLTGAEVALLVFSPGKRAYSF 63
                    567789********************************98888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MAKKLTRGHQ KVPIVEMEKN NNLHVTFSKR RNGLFMKANE LCTLTGAEVA LLVFSPGKRA  60
YSFGHSSFES VIDKFVGNKP SPSVHGGTNH HVANHHGDNI DELNNKIIDL KTQLKANKKL  120
EEVLGQMIKE GQHKNWWQAP IGEMNLEQLL MMKKALEELK KKVQDELKRQ I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-36M-type_MADS family protein