PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027171205.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 255aa MW: 28459.1 Da PI: 8.0792

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027171205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.5e-13	61	107	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN + Lr+l+P K++Ka+ L ++++++k+L XP_027171205.1 61 RNHSEAERRRRERINGHLTSLRSLIPGT-----SKMDKAALLAEVINHVKEL 107 58***********************7.....6**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MEFFNSFNGF PENYGYQGTV KNGSGSSSSL ILDNEKGELV RALVRPGQKG VNAEKALVAL 60 RNHSEAERRR RERINGHLTS LRSLIPGTSK MDKAALLAEV INHVKELRKK ATEATKGMLV 120 PTDTDEVRVE EHQADAAGEA SYTIRAFLCC DYKHELFSDL RQALETLPLK TVSAEIATLG 180 SRMVNVFEMT GCDQQNLENS EGRELLVNSV RQALRSVLDK FYASEEFLSR NALSNKRRRV 240 SLFNASSSSS LENLW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	72	ERRRRE
2	236	240	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-36	bHLH family protein