PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027171233.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17674.5 Da    PI: 10.13
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027171233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.17.4e-11247449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    e k n + tfsk rn ++ KA+ L++L +ae a+++fs+  k y +
  XP_027171233.1  2 EKKNNLHATFSKCRNDLFMKANQLCTLNGAELALLVFSPGKKAYAF 47
                    6788999********************************9998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MEKKNNLHAT FSKCRNDLFM KANQLCTLNG AELALLVFSP GKKAYAFGHS SFESVTDKFL  60
GNKPSPSIHG GTYHHVVANH HGDNISELNK IIDLKKQLKA NKKCEEVLVQ MIQEGQHKNW  120
WQAPIEEMNL EQLLKLKKAL KGLKKKVEDE VKRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-26M-type_MADS family protein