PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027171247.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24127 Da    PI: 10.6651
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027171247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.7e-182263849
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    n  vtfskRrng++KKA+EL++L++ae+a+ ++s  +k y +
  XP_027171247.1 22 NLPVTFSKRRNGLFKKASELCTLTEAEIALAVLSRGQKAYSF 63
                    5579*******************************9999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MAKKLTRGRQ KVPVAKMEMM NNLPVTFSKR RNGLFKKASE LCTLTEAEIA LAVLSRGQKA  60
YSFGNLSFES VVHKYLGRNP APSMHAIEKH LKAERRRGEI FDRRIKEGQH KYWWQVPIRE  120
LNLVQLQKLQ EALEDMKKKI ENELHKRQIE ATNICQYLTK RSNSASGPNE FSPFGAIAVD  180
HLATTILNAR APVTGGSNIS QGNKPSCFYK FL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-31M-type_MADS family protein