PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027171415.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 282aa    MW: 31256.4 Da    PI: 8.4705
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027171415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.43e-211764249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +i+n+   qvtfskRr+g++KKA+EL++L++ eva+++fs+  k+y +
  XP_027171415.1 17 KIQNEQHLQVTFSKRRAGLFKKASELCTLTGSEVALVVFSPGEKVYSF 64
                    699*******************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MVLVKKTRGR QKIDIAKIQN EQHLQVTFSK RRAGLFKKAS ELCTLTGSEV ALVVFSPGEK  60
VYSFGSPNID AIIEKFEFST PKSVDASTLL LEAHHRFNVQ HLNKQLSILE NQLEAKKKIG  120
ETLNQLRKVG QIRHWWDAPI NDLNLEQLES LHSALLELQN TVRIELEKPI YENTNQVPDL  180
NEINPYGISP LGINTRENEG GAFDLIQSQP PRTKAFAPTA ASSRVNTGIS SNAWTRALTA  240
EHGPTASLSF APNASEFDGA TMPSYPSQGF NTIHGGLTLF KI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-46M-type_MADS family protein