PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027171592.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 354aa MW: 40137.4 Da PI: 7.0568

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027171592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.3	1.7e-24	128	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_027171592.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218 99***************************8544444..48********************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_027171592.1 219 KNQLLLGIRRA 229 9999**997 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MRLSPAGFTQ QPPEGEKRCL NSELWHACAG PLVSLPAIGS RVVYFPQGHS EQVAASTNKE 60 VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEA SYLPADLGSP 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV 240 LSSVQEGLKK FTIHDQDNAP LEDNSKDNQT LKENDKDDDT PRYLSRVWKF AQNYSKEFII 300 GDPSEKVRTR SSTKKLIDNF EPKNIVDILK DENCIMAMEE KLNQFERSKI WTLV

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MRLSPAGFTQ QPPEGEKRCL NSELWHACAG PLVSLPAIGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEA SYLPADLGSP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSVQEGLKK FTIHDQDNAP LEDNSKDNQT LKENDKDDDT PRYLSRVWKF AQNYSKEFII  300
GDPSEKVRTR SSTKKLIDNF EPKNIVDILK DENCIMAMEE KLNQFERSKI WTLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	1e-159	ARF family protein