PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172029.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 760aa MW: 84324 Da PI: 6.16

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.9	1.3e-16	82	137	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rr+ ++++++q++ Le++F+ ++p+ ++r++L lgL+ qVk+WFqN+R+++k XP_027172029.1 82 RRRYHRHSHHQIHKLESFFKVWPHPDDKQRKQLGLDLGLQPLQVKFWFQNKRTQMK 137 789999***********************************************999 PP
2	START	172.1	3.5e-54	277	497	3	206
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 +a++el+++a+ e+p+Wv+ + s+n+d ++ f+++ + +++ea++ s vv m++++lve ++d + +W +a +a ++ev XP_027172029.1 277 VISAMEELIRMAEIEFPLWVSTAdnrsYSLNEDAYYNLFPTAIGlkpvgFKVEASKGSDVVLMNHMNLVEVFMDMN-KWLAVFAsiisRALVIEV 370 5689*****************999999******99999****************************.************** PP ECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 85 issg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 +s g g+lq m+ae+q l+p+vp R++ f+Ry++qlg+g+w ivdvS d+ + ++v+++++pSg++i++++n sk+twvehv+ XP_027172029.1 371 LSAGpepgnfdGTLQMMTAEYQILTPTVPtRESIFLRYCKQLGEGTWGIVDVSFDNLLCLD---PLVKCRRRPSGCIIQEMPNSCSKITWVEHVH 462 *******************************************************66...7************************** PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++ +h+l +++v+sgla+ga++wv+ l rqce+ XP_027172029.1 463 VQDEGVHYLGKPFVESGLAFGAQRWVSVLARQCER 497 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence
MPSTIGKRPL TIEESKNVEP FASSPAILLG QASPKEVEAP SIYMVSNASE DHIPNEELEH 60 KSDSETQDDN PVEGLSCSTR KRRRYHRHSH HQIHKLESFF KVWPHPDDKQ RKQLGLDLGL 120 QPLQVKFWFQ NKRTQMKTHL ERAENARLKV ENDKLRAENV KCKEVLSRAC CLTCDDAQAT 180 ADVSLDDNQL RVENSKLKEK IANLTGLIAR YVGNKHYADN TSALSSAIPS SSTEPQWVAS 240 LRGGQQDITQ EFALDEALFK SLARPIGIDK PKAIEVVISA MEELIRMAEI EFPLWVSTAD 300 NRSYSLNEDA YYNLFPTAIG LKPVGFKVEA SKGSDVVLMN HMNLVEVFMD MNKWLAVFAS 360 IISRALVIEV LSAGPEPGNF DGTLQMMTAE YQILTPTVPT RESIFLRYCK QLGEGTWGIV 420 DVSFDNLLCL DPLVKCRRRP SGCIIQEMPN SCSKITWVEH VHVQDEGVHY LGKPFVESGL 480 AFGAQRWVSV LARQCERLAS ALVTNFSPND INDTVLISPE GRKNILRLSE RMVLRFCAGV 540 TSSTAHAWLN LSESGNDQIR IMTKRRENDL GEPSGVVLSA TTSFWLPVSH KFVFDFLRDE 600 STRTQWDILF NCEDIIEILH ISNGNEVGNC ISLLRGTNSN LGSLLMLQEC GTHQTGSYIV 660 YAPIDNGTVD MLLDGASSDH VTLLPSGFTI YPSGPTPKSI HVDAISGAAR DAGSLLTIAF 720 QILVNPVPNA NIPATSIPSI SNLIEYTSHK IRAALALRGA

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence

MPSTIGKRPL TIEESKNVEP FASSPAILLG QASPKEVEAP SIYMVSNASE DHIPNEELEH  60
KSDSETQDDN PVEGLSCSTR KRRRYHRHSH HQIHKLESFF KVWPHPDDKQ RKQLGLDLGL  120
QPLQVKFWFQ NKRTQMKTHL ERAENARLKV ENDKLRAENV KCKEVLSRAC CLTCDDAQAT  180
ADVSLDDNQL RVENSKLKEK IANLTGLIAR YVGNKHYADN TSALSSAIPS SSTEPQWVAS  240
LRGGQQDITQ EFALDEALFK SLARPIGIDK PKAIEVVISA MEELIRMAEI EFPLWVSTAD  300
NRSYSLNEDA YYNLFPTAIG LKPVGFKVEA SKGSDVVLMN HMNLVEVFMD MNKWLAVFAS  360
IISRALVIEV LSAGPEPGNF DGTLQMMTAE YQILTPTVPT RESIFLRYCK QLGEGTWGIV  420
DVSFDNLLCL DPLVKCRRRP SGCIIQEMPN SCSKITWVEH VHVQDEGVHY LGKPFVESGL  480
AFGAQRWVSV LARQCERLAS ALVTNFSPND INDTVLISPE GRKNILRLSE RMVLRFCAGV  540
TSSTAHAWLN LSESGNDQIR IMTKRRENDL GEPSGVVLSA TTSFWLPVSH KFVFDFLRDE  600
STRTQWDILF NCEDIIEILH ISNGNEVGNC ISLLRGTNSN LGSLLMLQEC GTHQTGSYIV  660
YAPIDNGTVD MLLDGASSDH VTLLPSGFTI YPSGPTPKSI HVDAISGAAR DAGSLLTIAF  720
QILVNPVPNA NIPATSIPSI SNLIEYTSHK IRAALALRGA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	84	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	HD-ZIP family protein