PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027172095.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 258aa    MW: 29939 Da    PI: 5.0135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027172095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  +v ++G  +W+  ++  g+ R++k+c++rw +yl
   XP_027172095.1 14 KGAWSEEEDNKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding53.74.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+el+++ +k+lG++ W++I ++++ gRt++++k++w+++l
   XP_027172095.1  67 RGNFSEEEEELILKSHKELGNR-WSAITARLP-GRTDNEVKNYWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MVRTTCIDKS GLKKGAWSEE EDNKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPGVKRGNF SEEEEELILK SHKELGNRWS AITARLPGRT DNEVKNYWHT HLRKRNKQDS  120
KPKDKIEQTS ERSQPMDSDA DQDKESSAIS IFHSTTDQNR SGLETEIAAD TNCELSPLSC  180
GSKHFDGGDW FGEDSNSSVE SLPESFESFW TEPFALDTSY SNLKVINYDW LPPVEEEFTY  240
ASSSFLDEDM DWFHELIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-57MYB family protein