PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172131.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 219aa MW: 24414.6 Da PI: 6.513

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22	2.9e-07	14	62	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +++ E++RRd+++s +eL +llP++ s+ + L +A+++Iks+ XP_027172131.1 14 GKKISEKNRRDQMKSLCAELYRLLPND---ISTGfCPLPDKLGEAINHIKSM 62 57899*********************8...4444466667777777777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MKRLHASASN TKTGKKISEK NRRDQMKSLC AELYRLLPND ISTGFCPLPD KLGEAINHIK 60 SMEKKLENYK EWKQKLLFGK RPCSSTSSES NNSSKLTNVE VQEIGPDATV ILISGMEEQA 120 SFYGIIPRLH EEGFEVVNAN FSNNGTSMLQ VVHQKVGAST SGSETTAVSK RLKELIHGYS 180 QGEVESNLDL WDFGIEPDLL TSDFLGPFTT DNFCLLQQH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	25	EKNRRDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-18	bHLH family protein