PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027172290.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 238aa    MW: 26935.6 Da    PI: 8.305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027172290.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.9e-1374121253
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                     ++ GVr++k  g+++AeIrdp     + k+++lg+f taeeA +a+ a  +++
  XP_027172290.1  74 RFVGVRRRK-FGKYAAEIRDPI----KkKKIWLGTFKTAEEASEAYLAKQREF 121
                     789***999.9*********72....35******************9987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MTPQSDNLAK KNMTIRKIRV LYSDPAATDS SSDEEQSSHE KKPKRIIHEI VIDQKKMAPS  60
QPKFKWDKKN KEKRFVGVRR RKFGKYAAEI RDPIKKKKIW LGTFKTAEEA SEAYLAKQRE  120
FKALEGFQWE PIDCKQSYLS GSSDEDQLQS SMPTPEALGS PTHTRSESSH DSSSSMSKEN  180
LKVQCLEFDG GCVMGMFVPV PKGPEDYPGS EFFLPILDNQ GFLLGEFSKL DDLSICLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17998RRRKFGKYAAEIRDPIKKKK
28099RRRKFGKYAAEIRDPIKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.17e-20ERF family protein