PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027172695.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 597aa    MW: 64572.4 Da    PI: 7.0393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027172695.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.31.7e-1112355943374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+v+ + l  a++lL ++ el+sp g++ +R+aayf+ AL+ar+++s  ++y+ l+ ++ ++++ ++ ++al++++ +sP++kfsh+t
  XP_027172695.1 235 GLLLQCAECVAMDRLDDASNLLPEIAELSSPFGSSAERVAAYFADALSARIVSSYLGTYAPLTIKSLTKSHNQKLFNALQTYNSISPLIKFSHFT 329
                     58********************************************************************************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.el 191
                     aNqaI +a++ge++vH+iD+di+qGlQWp L++ LasRp++  sl+iTg+gs    s e le+tg+rL++fA +lg+pfefn++ + ++ ++ +l
  XP_027172695.1 330 ANQAIFQALHGEDHVHVIDLDIMQGLQWPGLFHILASRPRKIKSLKITGLGS----SMELLESTGRRLSEFAGSLGLPFEFNPV-EGKIGNVkDL 419
                     ****************************************************....***************************6.5555555489 PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                      +Lrv  gE++++++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+++s er++vE
  XP_027172695.1 420 GQLRVMAGETIVIHWMH--HCLYDITGSDFG----TLRLLTLLRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGTDSVERHTVE 507
                     ***************99..777766777777....**********************.789********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++llg ei+n+va  g +r+ + + +e+  e l++ GF+pv+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  XP_027172695.1 508 QQLLGCEIRNIVAVGGPKRTGEVK-VERLGEELRRIGFRPVSLAGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 594
                     ******************998887.99999*********************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    
MSRENCLFKA YAPPHRLLVT KCAYTFCQFL LDKYPHKVLR LLILSSPFLP PHEPYNPSPP  60
RYSPQAQSLP LPPPSFPVHT NQAIISPLPT ALSSSITASN SIYPSIMLQS LLHSNSTATS  120
ASNPINSVPI PIPLPPSRNA RPSSNSSSSS SSSTSMQSKR SSSAHHDDPS SSSSSLLKRR  180
RSSLGPDNPS TSADRTTDLD NEDDDVAELE AAAAAASLGG AAAGDTESSG LRLLGLLLQC  240
AECVAMDRLD DASNLLPEIA ELSSPFGSSA ERVAAYFADA LSARIVSSYL GTYAPLTIKS  300
LTKSHNQKLF NALQTYNSIS PLIKFSHFTA NQAIFQALHG EDHVHVIDLD IMQGLQWPGL  360
FHILASRPRK IKSLKITGLG SSMELLESTG RRLSEFAGSL GLPFEFNPVE GKIGNVKDLG  420
QLRVMAGETI VIHWMHHCLY DITGSDFGTL RLLTLLRPKL ITIVEQDLSH GGSFLGRFVE  480
ALHYYSALFD ALGDGLGTDS VERHTVEQQL LGCEIRNIVA VGGPKRTGEV KVERLGEELR  540
RIGFRPVSLA GNPAAQASLL LGMFPWKGYT LVEENGCLKL GWKDLSLLTA SAWQPSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-173GRAS family protein