PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172718.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 200aa MW: 22093.7 Da PI: 6.9017

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.4	2.8e-44	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cv+apyfpa++p+kfa vh++FGasnv k+l++lpe++r da+s++vyeA+ar+rdPvyG+v+ i++lq+q++ l+++la XP_027172718.1 17 PCAACKLLRRRCSQECVFAPYFPADEPHKFASVHRVFGASNVNKMLQELPEHQRGDAVSAMVYEANARMRDPVYGCVSAISSLQNQVDLLQSQLA 111 7********************************************************************************************** PP DUF260 96 llkee 100 l++++ XP_027172718.1 112 LAQAQ 116 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MKESGRKQVG VVAGGSPCAA CKLLRRRCSQ ECVFAPYFPA DEPHKFASVH RVFGASNVNK 60 MLQELPEHQR GDAVSAMVYE ANARMRDPVY GCVSAISSLQ NQVDLLQSQL ALAQAQVLQM 120 RISSTQSSSS LISMSQDQYY NSTTVPTDHN SAPPDHHHQN HSPTASRDHR HLEPISSHFN 180 TDTPPMMLDE GNIGDSLWSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	7e-59	LBD family protein