PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172731.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 356aa MW: 39794.9 Da PI: 4.9761

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.8	2.4e-13	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed +l+ +++ G +W++ ++ g+ R++k+c++rw +yl XP_027172731.1 16 KGPWSPAEDYRLISFIQKQGHANWRALPKQAGLLRCGKSCRLRWINYL 63 79****************************99**********97 PP
2	Myb_DNA-binding	55.7	1.2e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l XP_027172731.1 69 RGNFTPEEEQTIINLHNALGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGRGRAPCCD KSKVKKGPWS PAEDYRLISF IQKQGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTPEEEQTI INLHNALGNK WSKIASHLPG RTDNEIKNVW NTHLKKRLVL 120 GNDDANCHQK IETSNSFTSY SASPSPSSSS CISYGDLNTE KGPGGDQEGL HSKVDEQQEP 180 CTSPTHPNAP NLENFSQPAE ETCSLDSCIK SKASPEVRKT TTDEPKEMAQ DGNIMEIPLE 240 PDADFWNFLD GLDPMDKSTE SQPQQEYGVS QSSNSGENHQ EEVHEYKRWL RYLENELGLV 300 GGNDGECPQK GAGAEQQQQQ LVTDTSDDEM MSRPEFDPAA MAYFSMWPSS PQNFGI

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGRGRAPCCD KSKVKKGPWS PAEDYRLISF IQKQGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTPEEEQTI INLHNALGNK WSKIASHLPG RTDNEIKNVW NTHLKKRLVL  120
GNDDANCHQK IETSNSFTSY SASPSPSSSS CISYGDLNTE KGPGGDQEGL HSKVDEQQEP  180
CTSPTHPNAP NLENFSQPAE ETCSLDSCIK SKASPEVRKT TTDEPKEMAQ DGNIMEIPLE  240
PDADFWNFLD GLDPMDKSTE SQPQQEYGVS QSSNSGENHQ EEVHEYKRWL RYLENELGLV  300
GGNDGECPQK GAGAEQQQQQ LVTDTSDDEM MSRPEFDPAA MAYFSMWPSS PQNFGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	6e-79	MYB family protein