PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172892.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 223aa MW: 24998.3 Da PI: 6.3631

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.7	1.6e-06	12	61	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIks 53 +++ ++ E++RRd++++ ++L +llP++ k+ + e A+ +Iks XP_027172892.1 12 KTKRKITEKNRRDQMKNLCNKLYRLLPSDIsKGL---CPQPDKIEDAIYHIKS 61 567899**********************743333...3333333455555554 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
METFHASASN TKTKRKITEK NRRDQMKNLC NKLYRLLPSD ISKGLCPQPD KIEDAIYHIK 60 SMEKKLEDYQ EIKKKLLHGK RPCSSASSES NNSSTLTDVE VQDIGPDANM ILISGLEEQA 120 SFYGIIRRLH AEGFEVVTAN FSNTGTSTLQ VVHEKVSSQV GASTSGSETT AVSKRLKELI 180 YGYPQGEVES KLDLLDFEIV PDLLTSDFFG PFATEKFCFL QQY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	25	EKNRRDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-12	bHLH family protein