PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027173166.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 351aa MW: 39272.1 Da PI: 7.3023

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027173166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl XP_027173166.1 14 KGPWSPEEDAKLKAYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.9	1.9e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_027173166.1 69 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSQMNRLS GSGQKDANGG IEENTWQNLS SSALERLQLH VQLQSLQNPF SFYNNPALWP 180 KLNPLQEKMI QSLQNLTESQ NPSMQQVSPS PQSGLGQNVE FLEQAAISSR LQQELENSIN 240 PLNPGNSPID STLAPKSNVM QQPGSEYQPI STFTPAEIDN LLSSKTASFL SSDNQMAEFD 300 CFKEIDGVRD ALMWWSNDMD TNSASSNSWD SASLLQQSGG MYQDYAVGYN M

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSQMNRLS GSGQKDANGG IEENTWQNLS SSALERLQLH VQLQSLQNPF SFYNNPALWP  180
KLNPLQEKMI QSLQNLTESQ NPSMQQVSPS PQSGLGQNVE FLEQAAISSR LQQELENSIN  240
PLNPGNSPID STLAPKSNVM QQPGSEYQPI STFTPAEIDN LLSSKTASFL SSDNQMAEFD  300
CFKEIDGVRD ALMWWSNDMD TNSASSNSWD SASLLQQSGG MYQDYAVGYN M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	5e-98	MYB family protein