PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027173593.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 694aa    MW: 75613.4 Da    PI: 6.5619
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027173593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.57e-29208261155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_027173593.1 208 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 261
                     79*******************.********************************8 PP
2Myb_DNA-binding37.74.6e-12210260148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v av+qlG +   +k+I   m+ +g+t++++ s++qky+
   XP_027173593.1 210 RVVWSIELHRKFVAAVNQLGIEkaVPKRILDLMNvEGLTRENVASHLQKYR 260
                      678***********************************************7 PP
3Response_reg79.41.2e-26261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll  +l+k +y +v++ +++++al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++++ + +  G
  XP_027173593.1  26 VLAVDDDPICLKLLDGLLRKCQY-HVTTSSQARAALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVMKGVTHG 118
                     799********************.***************888889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+ +eel++
  XP_027173593.1 119 ACDYLVKPVRIEELRN 134
                     **************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    
MTVEEVRGNS EGGDRNYDNF PVGMRVLAVD DDPICLKLLD GLLRKCQYHV TTSSQARAAL  60
KMLRENKDRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDPKL VMKGVTHGAC  120
DYLVKPVRIE ELRNIWQHVI RRKKFDTNKQ GKSTYEDKAL QGHGDVCQGH QNTGTTDQNG  180
KLNKKRKDEE DESEDTGNDH EDPSTQKKPR VVWSIELHRK FVAAVNQLGI EKAVPKRILD  240
LMNVEGLTRE NVASHLQKYR LYLKRISSVA TQQANMVAAL GGKDAAYMRM STLDGFGDFR  300
TLTGSGRLSN PAFASYTQGG MLGRLNSPAG INLRNLASPT VVHPSHAQTL NNSTGTLGKL  360
HPAVSPASHT ATVFQGVPSS LELDQLQQNK SAMHIGDFNP MDDSRIFGAP SAFTDARALA  420
INSNSNLTGV PNNSLMLQGN SQQILAGGGF VDQSSFPSES FNRDVGVSSK FVDHGRTNEN  480
WQSAVQLSKF PSNALAPNDS FSQGQLLLSN VRDNNSSAGP HQQNSPLGFS STATTAAPLE  540
DSRGEIQCQE GLVSGSVQNL SQASAQRWGV SKQSYSLNSN NSFSTLNPQA SPPLSQSMGQ  600
TGITDRRMDI CLTGQSGVGI SSFLQHSQVE NPTTGSRTRS SEDYMLEQIR PQGGFVPNSY  660
DSLDDLMSAI KREPNGSMFD GDMGFDAYQF GSCI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-135ARR-B family protein