PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027173959.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 324aa MW: 35981 Da PI: 5.3779

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027173959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l ++++++G+g +W + +r+ g++R++k+c++rw++yl XP_027173959.1 14 RGPWSPEEDAILRNYIEKYGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	46.5	8.3e-15	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd +++ ++ G++ W+ Ia++++ gRt++++k++w++ XP_027173959.1 69 GGFTDEEDSIILTLHSNIGSR-WSVIASHLP-GRTDNDVKNHWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MGRAPCCDKT KVKRGPWSPE EDAILRNYIE KYGTGGNWIA LPRKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTDEEDSIIL TLHSNIGSRW SVIASHLPGR TDNDVKNHWN TKLKKKLSAV 120 NATNPTTVIP IVDSNSNNFT SNPSAFTLAT SFNKPQPDCY GNSTYPIVGS DAPVQYSSMD 180 HMVLGYSMTE VVPDLLYDSS STDQFSLPEL FEVQENSTLQ KNGFTTSSSQ EISSLSPSCS 240 LAKSYSSWND NLFGEEVGFF VELESRSSNY NLVQSAQQEE KVSNEAEGSC LPIYSYPTAS 300 FFDQMSDNIL PPQGHHQTAF PILD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-71	MYB family protein