PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027173972.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 764aa MW: 84036.1 Da PI: 5.8835

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027173972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.6e-06	354	373	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr+++ G C+ G++CkF+H+ XP_027173972.1 354 CRHYLN-GRCQEGEKCKFSHD 373 9999.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MDLEMSLVQQ KSPFNETKEV HGFQDGGADT LNEVDGLDPT DIKDQGKETV TQDNNVNLVD 60 SSIVNNQTCE VPHEKDICNI VDFHREFSPR RELNVFNEPF IKEVPETVSS SVDIDGIADM 120 SIPVESNDAM NPTMEGHLPK GLEHELHLKQ KELEKLVSTS GNLDLSFGAI EDDEIEEGEI 180 SGEISEEMDL LYEDAVSLEE KKSGKVQISE HTDKEAFTRD DGDARLGDCD TRSSMFLDTV 240 DSETEGFRKE HTSAEVFSHS EETATKTLDG YDASLEIGLT AEQVLGVNKT DHPAISLENL 300 SQHGLMHEDT AENKSSVDAK MKKERIKRAA KNRELGVKRL KLQPLSKPKT VTYCRHYLNG 360 RCQEGEKCKF SHDTTPLTKS KPCSYFARHS CMKGDNCPFD HQLSKYPCNN IVTNGFCSRG 420 AGCLFSHEIS AKDGSLPTSN VTKPESKSPT LVSKTISKKQ VNNQGVPHQH ADAKFSVMAN 480 ISGKSTEKKA SEHLDRPSAQ TPKGICFISH VRSPPGDTSK HKQAVPHLKG DNSDKVSYSM 540 TRNLEDSIQK SNDLAKGAPS KMPRGINFLL FGKRPLDESL NRDYGVSESL LGQVSKSKLV 600 DSPLKSEVRV KIDNQAAQSS ADLELKVNKT ANIVSPSSMP QAMKFLSYGK TPVDNPTAIS 660 QRDTLRSIVN VGLPLVQRKE YALDGLKFFP AMPQRSASSS QPFDQSLDQP STGGMSSFSK 720 TSLLLNAPTS VQKALRSTLA FAAKLDSEIK LNQSLDTPSD INKI

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MDLEMSLVQQ KSPFNETKEV HGFQDGGADT LNEVDGLDPT DIKDQGKETV TQDNNVNLVD  60
SSIVNNQTCE VPHEKDICNI VDFHREFSPR RELNVFNEPF IKEVPETVSS SVDIDGIADM  120
SIPVESNDAM NPTMEGHLPK GLEHELHLKQ KELEKLVSTS GNLDLSFGAI EDDEIEEGEI  180
SGEISEEMDL LYEDAVSLEE KKSGKVQISE HTDKEAFTRD DGDARLGDCD TRSSMFLDTV  240
DSETEGFRKE HTSAEVFSHS EETATKTLDG YDASLEIGLT AEQVLGVNKT DHPAISLENL  300
SQHGLMHEDT AENKSSVDAK MKKERIKRAA KNRELGVKRL KLQPLSKPKT VTYCRHYLNG  360
RCQEGEKCKF SHDTTPLTKS KPCSYFARHS CMKGDNCPFD HQLSKYPCNN IVTNGFCSRG  420
AGCLFSHEIS AKDGSLPTSN VTKPESKSPT LVSKTISKKQ VNNQGVPHQH ADAKFSVMAN  480
ISGKSTEKKA SEHLDRPSAQ TPKGICFISH VRSPPGDTSK HKQAVPHLKG DNSDKVSYSM  540
TRNLEDSIQK SNDLAKGAPS KMPRGINFLL FGKRPLDESL NRDYGVSESL LGQVSKSKLV  600
DSPLKSEVRV KIDNQAAQSS ADLELKVNKT ANIVSPSSMP QAMKFLSYGK TPVDNPTAIS  660
QRDTLRSIVN VGLPLVQRKE YALDGLKFFP AMPQRSASSS QPFDQSLDQP STGGMSSFSK  720
TSLLLNAPTS VQKALRSTLA FAAKLDSEIK LNQSLDTPSD INKI