PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174004.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 210aa MW: 23029 Da PI: 9.8705

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63	4.3e-20	55	109	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq+ +Le+ F+k+ +++++++ eLA++lgL+ rqV vWFqNrRa+ k XP_027174004.1 55 RKKLRLSKEQTAVLEDSFKKHTTLNTAQKIELAARLGLKPRQVEVWFQNRRARTK 109 788899***********************************************98 PP
2	HD-ZIP_I/II	116.9	1.1e-37	55	144	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq ++LE+sF+++++L++ +K ela +Lgl+prqv+vWFqnrRARtk+kq+E+d+e k+++d+l+een +L+ke ++L+ +l XP_027174004.1 55 RKKLRLSKEQTAVLEDSFKKHTTLNTAQKIELAARLGLKPRQVEVWFQNRRARTKLKQTETDCELWKNHCDNLREENGKLKKEIDDLK-AL 144 69************************************************************************************99.44 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MVDDDFCNTK LALGIGTSSG NSLPKPDKRA LSLDLSLVDE GQSSRNSEDN GGESRKKLRL 60 SKEQTAVLED SFKKHTTLNT AQKIELAARL GLKPRQVEVW FQNRRARTKL KQTETDCELW 120 KNHCDNLREE NGKLKKEIDD LKALRAAFYA QITNCVGISV CPSCKKVQGV ATKGSSSGDG 180 KHERNATAAA ASGDVVQSPK YKHSGLKIRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	60	SRKKLRL
2	104	112	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-48	HD-ZIP family protein