PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027174005.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 176aa    MW: 19925.6 Da    PI: 9.7109
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027174005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.23.9e-1555117356
                     --SS--HHHHHHHHHHHHHSSS--HHHH.........HHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeer.........eeLAkklgLterqVkvWFqNrRakek 56 
                     k+ +++keq  +Le+ F+ +++p+++++          eLA++lgL  rqV +WFqNrRa+ k
  XP_027174005.1  55 KKSRLSKEQAAVLEANFNDHPNPDTDRKlieilqalkNELADRLGLFPRQVDIWFQNRRARTK 117
                     56789*******************98843333333337999999*****************98 PP
2HD-ZIP_I/II79.93.9e-2655150288
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeper.........KvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                     kk rlskeq+++LE +F+ + + +++r         K+ela +Lgl prqv++WFqnrRARtk+k+  +++e+Lk+ +++l een +L++e e+ 
  XP_027174005.1  55 KKSRLSKEQAAVLEANFNDHPNPDTDRklieilqalKNELADRLGLFPRQVDIWFQNRRARTKSKKNVSECERLKQVCKNLIEENLKLSEEIEKQ 149
                     9****************9987766666222222222679**************************************************999875 PP

     HD-ZIP_I/II  88 r 88 
                     +
  XP_027174005.1 150 K 150
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MEARENSNTQ LSLALGPRKN TKRGPRKNTK RVLSLELSLG AQQVQGQESS DENAKKSRLS  60
KEQAAVLEAN FNDHPNPDTD RKLIEILQAL KNELADRLGL FPRQVDIWFQ NRRARTKSKK  120
NVSECERLKQ VCKNLIEENL KLSEEIEKQK ALATGDQKGA FYAYGLSGYV LVCPDE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-25HD-ZIP family protein